Evidence map›Paper›PMID 41048016›Full record

ArticleJournal of medicinal chemistry2025

High-Throughput Identification and Characterization of LptDE-Binding Bicycle Peptides Using Phage Display and Cryo-EM.

Shenaz Allyjaun, Emily Dunbar, Steven W Hardwick, Sarah Newell, Finn Holding, Catherine E Rowland, Megan A St Denis, Simone Pellegrino, Gustavo Arruda Bezerra, Nikolaos Bournakas and 11 more

Abstract read
In one paragraph

Article in Journal of medicinal chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Shenaz AllyjaunBiosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K.ORCID 0009-0004-3429-9378
Emily DunbarBiosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K.
Steven W HardwickDepartment of Biochemistry, University of Cambridge, 80 Tennis Court Road, Cambridge CB2 1GA, U.K.
Sarah NewellBicycleTx Ltd, Blocks A&B, Portway Building, Granta Park, Great Abington, Cambridge CB21 6GS, U.K.ORCID 0009-0001-6670-4639
Finn HoldingBicycleTx Ltd, Blocks A&B, Portway Building, Granta Park, Great Abington, Cambridge CB21 6GS, U.K.ORCID 0009-0004-9303-349X
Catherine E RowlandBicycleTx Ltd, Blocks A&B, Portway Building, Granta Park, Great Abington, Cambridge CB21 6GS, U.K.ORCID 0000-0002-0064-8312
Megan A St DenisBicycleTx Ltd, Blocks A&B, Portway Building, Granta Park, Great Abington, Cambridge CB21 6GS, U.K.ORCID 0000-0002-5189-2892
Simone PellegrinoBicycleTx Ltd, Blocks A&B, Portway Building, Granta Park, Great Abington, Cambridge CB21 6GS, U.K.ORCID 0000-0001-6302-2774
Gustavo Arruda BezerraBicycleTx Ltd, Blocks A&B, Portway Building, Granta Park, Great Abington, Cambridge CB21 6GS, U.K.ORCID 0000-0003-4471-821X
Nikolaos BournakasBicycleTx Ltd, Blocks A&B, Portway Building, Granta Park, Great Abington, Cambridge CB21 6GS, U.K.
Dimitri Y ChirgadzeDepartment of Biochemistry, University of Cambridge, 80 Tennis Court Road, Cambridge CB2 1GA, U.K.
Lee CooperDepartment of Biochemistry, University of Cambridge, 80 Tennis Court Road, Cambridge CB2 1GA, U.K.
Giulia ParisDepartment of Biochemistry, University of Cambridge, 80 Tennis Court Road, Cambridge CB2 1GA, U.K.ORCID 0000-0002-5610-2722
Nick LewisBicycleTx Ltd, Blocks A&B, Portway Building, Granta Park, Great Abington, Cambridge CB21 6GS, U.K.
Peter BrownBicycleTx Ltd, Blocks A&B, Portway Building, Granta Park, Great Abington, Cambridge CB21 6GS, U.K.
Michael J SkynnerBicycleTx Ltd, Blocks A&B, Portway Building, Granta Park, Great Abington, Cambridge CB21 6GS, U.K.ORCID 0000-0001-6586-9055
Michael J DawsonBicycleTx Ltd, Blocks A&B, Portway Building, Granta Park, Great Abington, Cambridge CB21 6GS, U.K.
Paul BeswickBicycleTx Ltd, Blocks A&B, Portway Building, Granta Park, Great Abington, Cambridge CB21 6GS, U.K.
Julia HubbardBiosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K.
Bert van den BergBiosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K.
Hector NewmanBicycleTx Ltd, Blocks A&B, Portway Building, Granta Park, Great Abington, Cambridge CB21 6GS, U.K.ORCID 0000-0003-2429-996X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The lipopolysaccharide (LPS) transport (Lpt) system in Gram-negative bacteria maintains the integrity of the asymmetric bacterial outer membrane (OM). LPS biogenesis systems are essential in most Gram-negative bacteria, with LptDE responsible for the delivery of LPS to the outer leaflet of the OM. As an externally accessible, essential protein, LptDE offers a promising target for inhibitor development without the need for cellular penetration. However, there are no direct inhibitors of

Indexed as

Bacterial Outer Membrane ProteinsPeptides, CyclicCryoelectron MicroscopyHigh-Throughput Screening AssaysLipopolysaccharidesPeptide LibraryShigella flexneriBacterial Outer Membrane ProteinsLipopolysaccharidesPeptide LibraryPeptides, Cyclic

Identifiers

PMID41048016
PMCPMC12557396

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.