Evidence map›Paper›PMID 41046257›Full record

ArticleEpigenetics & chromatin2025

Protamine expression in somatic cells condenses chromatin and disrupts transcription without altering DNA methylation.

Deepika Puri, Alexandra Bott, Monica Varona Baranda, Esra Dursun Torlak, Gina Esther Merges, Hubert Schorle, Wolfgang Wagner

Abstract read
In one paragraph

Article in Epigenetics & chromatin, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Deepika PuriInstitute of Stem Cell Biology, University Hospital of RWTH Aachen, 52074, Aachen, Germany. dpuri@ukaachen.de.
Alexandra BottInstitute of Stem Cell Biology, University Hospital of RWTH Aachen, 52074, Aachen, Germany.
Monica Varona BarandaInstitute of Stem Cell Biology, University Hospital of RWTH Aachen, 52074, Aachen, Germany.
Esra Dursun TorlakInstitute of Stem Cell Biology, University Hospital of RWTH Aachen, 52074, Aachen, Germany.
Gina Esther MergesDepartment of Developmental Pathology, Institute of Pathology, University Hospital Bonn, 53127, Bonn, Germany.
Hubert SchorleDepartment of Developmental Pathology, Institute of Pathology, University Hospital Bonn, 53127, Bonn, Germany.
Wolfgang WagnerInstitute of Stem Cell Biology, University Hospital of RWTH Aachen, 52074, Aachen, Germany. wwagner@ukaachen.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundProtamines play a crucial role in nuclear condensation during spermiogenesis, a process associated with significant chromatin remodeling and replacement of histones. While much research has focused on the function of protamines in sperm development and fertility, their effects in non-sperm cells remain largely unexplored. Protamines are increasingly used in the clinical setting, and understanding better, the role of protamines in somatic cells remains a critical unmet need.

resultsIn this study, we investigated the impact of overexpressing murine and human protamine 1 and 2 (PRM1 and PRM2) on nuclear architecture, histone eviction, DNA methylation, and transcription in HEK293T cells and mesenchymal stromal cells (MSCs). Overexpression of protamines resulted in nuclear condensation; particularly PRM1 showed notable enrichment in nucleoli, and cells exhibited cell cycle abnormalities. Immunofluorescence staining indicated a significant reduction in specific histone modifications (H3K9me3, H3K4me1, and H3K27Ac) in response to protamine expression, especially in MSCs. Interestingly, despite these changes in nuclear organization, the methylome remained largely stable. However, expression of protamines significantly diminished transcription, particularly of the ribosomal genes, upon PRM1 expression.

conclusionsOur studies indicate that PRM1 and PRM2 may bind to and condense distinct genomic regions in somatic cells, resulting in widespread silencing of gene expression, while retaining a largely stable DNA methylome.

Indexed as

ChromatinDNA MethylationProtaminesTranscription, GeneticAnimalsChromatin Assembly and DisassemblyHEK293 CellsHistonesHumansMesenchymal Stem CellsMiceChromatinHistonesprotamine 2ProtaminesDNA methylationNuclear condensationPRM1PRM2ProtamineTranscription

Identifiers

PMID41046257
PMCPMC12495770

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.