Evidence map›Paper›PMID 41044250›Full record

ArticleAnalytical and bioanalytical chemistry2025

Towards sustainable lipidomics: computational screening and experimental validation of chloroform-free alternatives for lipid extraction.

Andrea Venturi, Michele Wölk, Sider Penkov, Gabriele Cruciani, Maria Fedorova, Laura Goracci

Abstract readValidation Study
In one paragraph

Article in Analytical and bioanalytical chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Andrea VenturiDAISY Lab (Drug Discovery-Artificial Intelligence-Organic Synthesis), Department of Chemistry, Biology and Biotechnology, University of Perugia, Via Elce di Sotto 8, Perugia, 06123, Italy.ORCID http://orcid.org/0000-0002-9361-2553
Michele WölkCenter of Membrane Biochemistry and Lipid Research, University Hospital and Faculty of Medicine Carl Gustav Carus of TU Dresden, Dresden, Germany.ORCID http://orcid.org/0000-0001-5558-4582
Sider PenkovCenter of Membrane Biochemistry and Lipid Research, University Hospital and Faculty of Medicine Carl Gustav Carus of TU Dresden, Dresden, Germany.ORCID http://orcid.org/0000-0003-2386-9510
Gabriele CrucianiDAISY Lab (Drug Discovery-Artificial Intelligence-Organic Synthesis), Department of Chemistry, Biology and Biotechnology, University of Perugia, Via Elce di Sotto 8, Perugia, 06123, Italy.ORCID http://orcid.org/0000-0002-4162-8692
Maria FedorovaCenter of Membrane Biochemistry and Lipid Research, University Hospital and Faculty of Medicine Carl Gustav Carus of TU Dresden, Dresden, Germany. maria.fedorova@tu-dresden.de.ORCID http://orcid.org/0000-0002-4692-3885
Laura GoracciDAISY Lab (Drug Discovery-Artificial Intelligence-Organic Synthesis), Department of Chemistry, Biology and Biotechnology, University of Perugia, Via Elce di Sotto 8, Perugia, 06123, Italy. laura.goracci@unipg.it.ORCID http://orcid.org/0000-0002-9282-9013

Funding

Bundesministerium für Bildung und Forschung 01EJ2205ABundesministerium für Bildung und Forschung 031L0315ABundesministerium für Bildung und Forschung DEEP_HCCBundesministerium für Bildung und Forschung FERROPathDeutsche Forschungsgemeinschaft FE 1236/5-1Deutsche Forschungsgemeinschaft FE 1236/8-1Ministero dell'Università e della Ricerca-FSE REACT-EU resources CCI 2014IT16M2OP005
6 · The paper itself

Abstract

Sample preparation, particularly lipid extraction, plays a critical role in lipidomics workflows and strongly influences analytical outcomes. In biomedical research, the most commonly used lipid extraction protocols rely on chloroform due to its favorable physicochemical properties, including the ability to dissolve both polar and apolar lipids, as well as its high volatility. Although well-established chloroform-based methods enable high recovery of a broad range of lipids, concerns about the toxicity and environmental impact of chloroform necessitate the development of more sustainable alternatives. In this study, a combined computational and experimental strategy was employed to identify and validate greener solvents suitable for lipid extraction in lipidomics applications. Solvent selection was guided by Hansen solubility parameters, Abraham solvation descriptors, and principal component analysis, yielding five candidate solvents as potential chloroform alternatives. Evaluation of solvent sustainability and human health risk was conducted using CHEM21 criteria and supplemented by a comprehensive literature review. Initial validation of extraction efficiency for identified candidates was performed using synthetic lipid standards in the absence of a biological matrix, followed by testing lipid extraction from human plasma using both monophasic and biphasic extraction protocols. The highest extraction efficiency was achieved using a single-phase extraction method based on cyclopentyl methyl ether, which exhibited comparable and even superior performance to the conventional chloroform-based Folch protocol. Overall, this study highlights the feasibility of replacing chloroform with less hazardous solvents in lipidomics workflows without compromising analytical performance, and provides a comparative assessment of computational solvent prediction approaches for green chemistry applications.

Indexed as

Green Chemistry TechnologyLipidomicsLipidsChloroformHumansSolventsChloroformLipidsSolventsChloroform alternativesGreen solventsLipid extractionLipidomicsModelling

Identifiers

PMID41044250
PMCPMC12596327

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.