Evidence map›Paper›PMID 41044092›Full record

ArticleNature communications2025

Stereo-random oligonucleotides enable efficient recruitment of ADAR in vitro and in vivo.

Laura S Pfeiffer, Tobias Merkle, Paul Vogel, Inga Jarmoskaite, Jonathan M Geisinger, Ngadhnjim Latifi, Marco Herrera-Barrera, Feijie Zhang, Lisa Groß, Carolin Schlitz and 8 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Laura S Pfeiffer *Interfaculty Institute of Biochemistry, University of Tübingen, Tübingen, Germany.ORCID http://orcid.org/0000-0002-2487-4138
Tobias Merkle *Interfaculty Institute of Biochemistry, University of Tübingen, Tübingen, Germany.
Paul VogelDepartment of Genetics, Stanford University, Stanford, CA, USA.
Inga JarmoskaiteDepartment of Genetics, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0001-5847-5867
Jonathan M GeisingerDepartment of Genetics, Stanford University, Stanford, CA, USA.
Ngadhnjim LatifiInterfaculty Institute of Biochemistry, University of Tübingen, Tübingen, Germany.
Marco Herrera-BarreraStanford Institute for Stem Cell Biology and Regenerative Medicine, Stanford University, Stanford, CA, USA.
Feijie ZhangDepartment of Genetics, Stanford University, Stanford, CA, USA.
Lisa GroßInterfaculty Institute of Biochemistry, University of Tübingen, Tübingen, Germany.
Carolin SchlitzInterfaculty Institute of Biochemistry, University of Tübingen, Tübingen, Germany.
Daniel T HofackerInterfaculty Institute of Biochemistry, University of Tübingen, Tübingen, Germany.ORCID http://orcid.org/0000-0001-5880-0690
Clemens LochmannInterfaculty Institute of Biochemistry, University of Tübingen, Tübingen, Germany.ORCID http://orcid.org/0009-0005-3869-8242
Davide FumagalliInterfaculty Institute of Biochemistry, University of Tübingen, Tübingen, Germany.ORCID http://orcid.org/0009-0001-8336-1535
Stefanie GackstatterInterfaculty Institute of Biochemistry, University of Tübingen, Tübingen, Germany.
Vanessa DeislingInterfaculty Institute of Biochemistry, University of Tübingen, Tübingen, Germany.
Mark A KayDepartment of Genetics, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-2799-2615
Jin Billy LiDepartment of Genetics, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0003-0713-1399
Thorsten StafforstInterfaculty Institute of Biochemistry, University of Tübingen, Tübingen, Germany. thorsten.stafforst@uni-tuebingen.de.ORCID http://orcid.org/0000-0001-9359-3439

Funding

Acute/chronic limitations to transcriptional RNAi therapies for infectious and other liver diseasesR37AI071068 · NIAID · STANFORD UNIVERSITY · PI Mark A Kay · 2021 to 2026
$4.3M
Regulatory and Mechanistic Understanding of ADAR-Mediated RNA EditingR35GM144100 · NIGMS · STANFORD UNIVERSITY · PI Jin Billy Li · 2022 to 2026
$3.2M
3' tsRNAs: biologic function and pre-clinical targeting for treating human diseaseR01CA277059 · NCI · STANFORD UNIVERSITY · PI Mark A Kay · 2023 to 2026
$2.2M
EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) CoG 647328, PoC 101069246NCI NIH HHS R01 CA277059NIAID NIH HHS R37 AI071068NIGMS NIH HHS R35 GM144100
6 · The paper itself

Abstract

Site-directed RNA editing is a promising and potentially safer alternative to genome editing. Previous methods have been developed that recruit the endogenously and ubiquitously expressed ADAR enzymes to initiate site-specific A-to-I edits, but often suffer from low efficacy or dependency on viral delivery. Chemically modified oligonucleotides may be a promising alternative, but the approach still lacks systematic in-depth studies. Furthermore, the best characterized platform uses stereo-pure backbone chemistry, which is not widely used, commercially unavailable and challenging to manufacture. Here, we report on single-stranded oligonucleotides of 30-60 nt length, which are fully chemically stabilized by applying commercially available, classical RNA drug modifications, like 2´-O-methyl, 2´-fluoro, and DNA on a stereo-random phosphate/phosphorothioate backbone. We demonstrate our so-called RESTORE 2.0 oligonucleotides to induce the correction of pathogenic point mutations, efficacy after GalNAc-mediated uptake into human primary hepatocytes, and proof of in-vivo efficacy in mice upon lipid nanoparticle-mediated delivery. The discovered design principles may increase the accessibility of site-directed RNA base editing to expand and support further research in this field.

Indexed as

Adenosine DeaminaseOligonucleotidesRNA-Binding ProteinsRNA EditingAnimalsGene EditingHepatocytesHumansMaleMiceMice, Inbred C57BLNanoparticlesPoint MutationADAR protein, humanAdenosine DeaminaseOligonucleotidesRNA-Binding Proteins

Identifiers

PMID41044092
PMCPMC12494997

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.