Evidence map›Paper›PMID 41043001›Full record

ArticlePlant physiology2025

Vegetative to generative1 (Vgt1) is an enhancer affecting flowering time and jasmonate signaling in maize by promoting the expression of Zea mays Related to APETALA 2.7.

Johan Zicola, Blaise Weber, Xiaoyu Tu, Rechien Bader, Dimitrios Zisis, Stijn Aesaert, Silvio Salvi, Pawel Krajewski, Mieke Van Lijsebettens, Chuanshun Li and 5 more

Abstract read
In one paragraph

Article in Plant physiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Structural Variation and Its Roles in Plant Genomes.Plants (Basel, Switzerland) · 2026
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Johan ZicolaDepartment Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, Köln 50829, Germany.ORCID 0000-0002-7201-8221
Blaise WeberSwammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, Amsterdam 1098XH, The Netherlands.ORCID 0000-0001-7244-9198
Xiaoyu TuShanghai Collaborative Innovation Center of Agri-Seeds, Joint Center for Single Cell Biology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China.ORCID 0000-0002-0082-8989
Rechien BaderSwammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, Amsterdam 1098XH, The Netherlands.ORCID 0009-0001-4738-190X
Dimitrios ZisisInstitute of Plant Genetics, Polish Academy of Science, Strzeszyńska 34, Poznań 60-479, Poland.ORCID 0009-0005-6266-8924
Stijn AesaertDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.ORCID 0000-0001-8787-7347
Silvio SalviDepartment of Agricultural and Food Sciences, University of Bologna, Viale Fanin 44, Bologna 40127, Italy.ORCID 0000-0002-0338-8894
Pawel KrajewskiInstitute of Plant Genetics, Polish Academy of Science, Strzeszyńska 34, Poznań 60-479, Poland.ORCID 0000-0001-5318-9896
Mieke Van LijsebettensDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.ORCID 0000-0002-7632-1463
Chuanshun LiShanghai Collaborative Innovation Center of Agri-Seeds, Joint Center for Single Cell Biology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China.
Yangmeihui LiShanghai Collaborative Innovation Center of Agri-Seeds, Joint Center for Single Cell Biology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China.
Silin ZhongSchool of Life Sciences, The Chinese University of Hong Kong, EG12 Science Centre East, Hong Kong, China.ORCID 0000-0002-0198-7383
Stefan ScholtenDepartment of Crop Sciences & Center for Integrated Breeding Research (CiBreed), Georg-August-University Göttingen, Von-Siebold-Str. 8, Göttingen 37075, Germany.ORCID 0000-0002-1682-3365
Franziska TurckDepartment Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, Köln 50829, Germany.ORCID 0000-0002-4982-5949
Maike StamSwammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, Amsterdam 1098XH, The Netherlands.ORCID 0000-0003-0363-4677

Funding

Cluster of Excellence CEPLAS 390686111Cluster of Excellence CEPLAS EXC 2048/1DFGEpigenetic Regulation of Economically Important Plant TraitsEuropean Commission Seventh Framework-People-2012-ITN Project EpiTRAITS GA-316965Georg-August-Universität GöttingenKey Research and Development Program of Ningxia 2024BBF02003Max Planck Institute for Plant Breeding ResearchNational Natural Science Foundation of China 32370247National Natural Science Foundation of China 32461160289Shanghai Agricultural Science and Technology Innovation Program T2024306Shanghai Jiao Tong University 2030 InitiativeUniversity Grant Council N_CUHK410/24
6 · The paper itself

Abstract

Transcriptional enhancers participate in cell and tissue differentiation in all multicellular organisms. Here, we characterized the candidate enhancer Vegetative to generative1 (Vgt1), a major quantitative trait locus for flowering time in maize. Transgenic lines containing an inverted repeat that induces DNA methylation at Vgt1 showed early flowering and an accelerated growth rate during early development. DNA methylation of Vgt1 was associated with the downregulation of the AP2-like floral repressor ZmRap2.7 in specific leaf tissues at the early stages of maize development. In line with Vgt1 regulating ZmRap2.7, chromosome conformation capture data showed that Vgt1 physically interacts with the ZmRap2.7 transcription start site. Finally, chromatin immunoprecipitation of transiently expressed ZmRap2.7 in protoplasts indicated that this transcription factor binds to the promoters of several hundred genes. These genes include many genes that are differentially expressed in maize lines with and without extra DNA methylation at Vgt1. Altogether, we show that ZmRap2.7 is transcriptionally controlled by Vgt1 and is involved in regulating flowering time and other biological pathways, such as jasmonate signaling.

Indexed as

CyclopentanesEnhancer Elements, GeneticFlowersOxylipinsPlant ProteinsSignal TransductionZea maysDNA MethylationGene Expression Regulation, PlantPlants, Genetically ModifiedPromoter Regions, GeneticQuantitative Trait LociTranscription FactorsCyclopentanesjasmonic acidOxylipinsPlant ProteinsTranscription Factors

Identifiers

PMID41043001
PMCPMC12610936

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.