Evidence map›Paper›PMID 41042842›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Targeting the 3D genome by anthracyclines for chemotherapeutic effects.

Minkang Tan, Shengnan Sun, Yuchen Liu, Andrea A Perreault, Douglas H Phanstiel, Liping Dou, Baoxu Pang

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Crosstalk BetweenCancers · 2026
    Review
  2. Review
  3. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Minkang Tan *Department of Cell and Chemical Biology, Leiden University Medical Center, Leiden 2300 RC, The Netherlands.ORCID 0000-0002-6338-4975
Shengnan Sun *Department of Cell and Chemical Biology, Leiden University Medical Center, Leiden 2300 RC, The Netherlands.ORCID 0000-0003-0901-4807
Yuchen Liu *State Key Laboratory of Experimental Hematology, Senior Department of Hematology, The Fifth Medical Center of Chinese People's Liberation Army General Hospital, Beijing 100853, People's Republic of China.
Andrea A PerreaultDepartment of Biology, Elon University, Elon, NC 27244.
Douglas H PhanstielThurston Arthritis Research Center, University of North Carolina, Chapel Hill, NC 27599.
Liping DouState Key Laboratory of Experimental Hematology, Senior Department of Hematology, The Fifth Medical Center of Chinese People's Liberation Army General Hospital, Beijing 100853, People's Republic of China.ORCID 0000-0001-7352-9560
Baoxu PangDepartment of Cell and Chemical Biology, Leiden University Medical Center, Leiden 2300 RC, The Netherlands.ORCID 0000-0003-0779-0730

Funding

EC | European Research Council (ERC) 950655-SilencerHHS | NIH (NIH) 5T32 CA217824HHS | NIH (NIH) R35-GM128645
6 · The paper itself

Abstract

The chromatin is folded into three-dimensional (3D) structures, and aberrant 3D chromatin folding has been implicated in cancer. We performed ATAC-seq and TOP2A ChIP-seq to assess the potential effects of various anthracycline drugs on the chromatin architecture. We found that specific anthracycline variants selectively disrupt chromatin looping anchors by interfering with CTCF binding, suggesting an additional therapeutic mechanism of anthracycline drugs targeting the 3D genome. Hi-C experiments in K562 cells treated with anthracycline drugs revealed widespread disruption of 3D chromatin organization, including altered long-range regulation at the

Indexed as

AnthracyclinesAntineoplastic AgentsChromatinGenome, HumanLeukemia, Myeloid, AcuteCCCTC-Binding FactorHumansK562 CellsAnthracyclinesAntineoplastic AgentsCCCTC-Binding FactorChromatinCTCF protein, human3D genomeanthracyclinesChemotherapyCTCFmyeloid leukemia

Identifiers

PMID41042842
PMCPMC12519215

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.