Evidence map›Paper›PMID 41040296›Full record

ArticlebioRxiv : the preprint server for biology2025

Lysosome-dependent nutrient scavenging underlies stress adaptation during epithelial-to-mesenchymal transition.

Michal J Nagiec, Paola M Cavaliere, Friederike Dundar, Derrick M Spencer, Nikolaos Koundouros, Joana B Nunes, Sejeong Shin, Sang-Oh Yoon, Julie Han, Andre Chavez and 11 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Michal J NagiecDepartment of Pharmacology, Weill Cornell Medicine, New York, NY, USA.
Paola M CavaliereMeyer Cancer Center, Weill Cornell Medicine, New York, NY, USA.
Friederike DundarDepartment of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA.
Derrick M SpencerDepartment of Pharmacology, Weill Cornell Medicine, New York, NY, USA.
Nikolaos KoundourosDepartment of Pharmacology, Weill Cornell Medicine, New York, NY, USA.
Joana B NunesDepartment of Pharmacology, Weill Cornell Medicine, New York, NY, USA.
Sejeong ShinDepartment of Pharmacology, Weill Cornell Medicine, New York, NY, USA.
Sang-Oh YoonDepartment of Pharmacology, Weill Cornell Medicine, New York, NY, USA.
Julie HanDepartment of Pharmacology, Weill Cornell Medicine, New York, NY, USA.
Andre ChavezDepartment of Pharmacology, Weill Cornell Medicine, New York, NY, USA.
Olivia M KesterDepartment of Pharmacology, Weill Cornell Medicine, New York, NY, USA.
Rabia KhanDepartment of Pharmacology, Weill Cornell Medicine, New York, NY, USA.
Paul ZumboDepartment of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA.
Eric E GardnerMeyer Cancer Center, Weill Cornell Medicine, New York, NY, USA.
Bobak ParangMeyer Cancer Center, Weill Cornell Medicine, New York, NY, USA.
Anders P MutveiDepartment of Pharmacology, Weill Cornell Medicine, New York, NY, USA.
John M AsaraDivision of Signal Transduction, Beth Israel Deaconess Medical Center and Department of Medicine, Harvard Medical School, Boston, MA, USA.
Steven P GygiDepartment of Cell Biology, Harvard Medical School, Boston, MA, USA.
Doron BetelApplied Bioinformatics Core, Weill Cornell Medicine, New York, NY, USA.
Noah DephoureMeyer Cancer Center, Weill Cornell Medicine, New York, NY, USA.
John BlenisDepartment of Pharmacology, Weill Cornell Medicine, New York, NY, USA.

Funding

Tuberous Sclerosis-Pathway and PathogenesisP01CA120964 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI David J. Kwiatkowski · 2007 to 2026
$35.9M
ONCOGENIC REGULATION OF S6 PROTEIN KINASE &CELL GROWTHR01CA046595 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI JOHN BLENIS · 1988 to 2026
$10.6M
Tumor Cell Biology Training ProgramT32CA009361 · NCI · DANA-FARBER CANCER INSTITUTE · PI GRAY, NATHANAEL SCHIANDER · 1985 to 2015
$8.9M
Mitogenic and Oncogenic Regulation of ERK/RSK SignalingR37CA046595 · NCI · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI BLENIS, JOHN · 2003 to 2012
$6.4M
The Role of Propionate Metabolism in Non-Small Cell Lung CancerK08CA279653 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI Bobak Parang · 2024 to 2026
$579k
A JEM 1400 Electron Microscope for a Core FacilityS10RR027699 · NCRR · WEILL MEDICAL COLL OF CORNELL UNIV · PI MAXFIELD, FREDERICK R. · 2010 to 2010
$378k
ERK regulation of the cell fate decision networkF32GM106582 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI NAGIEC, MICHAL · 2013 to 2014
$107k
BIOLOGY OF THE OVARIAN FOLLICLE STEM CELLSF32CA009361 · NCI · CARNEGIE INSTITUTION OF WASHINGTON, D.C. · PI MARGOLIS, JONATHAN S · 1992 to 1994
–
NCI NIH HHS F32 CA009361NCI NIH HHS K08 CA279653NCI NIH HHS P01 CA120964NCI NIH HHS R01 CA046595NCI NIH HHS R37 CA046595NCI NIH HHS T32 CA009361NCRR NIH HHS S10 RR027699NIGMS NIH HHS F32 GM106582
6 · The paper itself

Abstract

Metastatic cancer cells invade tissue, overcome nutrient stress, and survive transit to distant sites. Many of the mechanisms that support these processes are incompatible with proliferation. This study defines cellular transition states in breast epithelial cells undergoing epithelial-mesenchymal transition (EMT) driven by ERK2 and TGF-β signaling. EMT triggers robust endolysosomal system upregulation and metabolic adaptations that balance proliferative and invasive states. Surprisingly, invasive cells rely on scavenging via lysosomes and macropinocytosis to acquire amino acids, rather than plasma membrane transport, even in nutrient-rich conditions. Macropinocytosis increases intracellular amino acid storage, promoting survival during amino acid deprivation. This metabolic shift depends on c-MYC downregulation, an early EMT event. Reintroducing c-MYC suppresses the metabolic switch, endolysosomal induction, macropinocytosis, and the proliferation-to-migration transition. These findings reveal how cells dynamically balance proliferation and invasion, offering insights into transition states difficult to capture in models of breast cancer metastasis.

Identifiers

PMID41040296
PMCPMC12485954

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.