Evidence map›Paper›PMID 41039240›Full record

ArticleBMC plant biology2025

Comparative transcriptome analysis between salt-tolerant and salt-sensitive naked barley landraces under salt stress at the germination stage.

Zhenzhu Guo, Shuwei Zhang, Guimei Guo, Yu Wang, Longhua Zhou, Chenghong Liu, Zhaxi Luobu, Qijun Bao, Zhiwei Chen

Abstract readComparative Study
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC plant biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Zhenzhu GuoShanghai Key Laboratory of Agricultural Genetics and Breeding, Biotechnology Research Institute，Shanghai Academy of Agricultural Sciences, Shanghai, 201106, China.
Shuwei ZhangShanghai Key Laboratory of Agricultural Genetics and Breeding, Biotechnology Research Institute，Shanghai Academy of Agricultural Sciences, Shanghai, 201106, China.
Guimei GuoShanghai Key Laboratory of Agricultural Genetics and Breeding, Biotechnology Research Institute，Shanghai Academy of Agricultural Sciences, Shanghai, 201106, China.
Yu WangShanghai Key Laboratory of Agricultural Genetics and Breeding, Biotechnology Research Institute，Shanghai Academy of Agricultural Sciences, Shanghai, 201106, China.
Longhua ZhouShanghai Key Laboratory of Agricultural Genetics and Breeding, Biotechnology Research Institute，Shanghai Academy of Agricultural Sciences, Shanghai, 201106, China.
Chenghong LiuShanghai Key Laboratory of Agricultural Genetics and Breeding, Biotechnology Research Institute，Shanghai Academy of Agricultural Sciences, Shanghai, 201106, China.
Zhaxi LuobuResearch Institute of Agriculture, Tibet Academy of Agricultural and Animal Husbandry Sciences, Lhasa, Tibet Autonomous Region, 850002, China. zhaluo_tibet@126.com.
Qijun BaoInstitute of Economic Crops and Malting Barley Material, Gansu Academy of Agricultural Sciences, Lanzhou, Gansu Province, 730070, China. baoqijun78@163.com.
Zhiwei ChenShanghai Key Laboratory of Agricultural Genetics and Breeding, Biotechnology Research Institute，Shanghai Academy of Agricultural Sciences, Shanghai, 201106, China. chenzhiwei@saas.sh.cn.

Funding

National Modern Agriculture Industry Technology System CARS-05-01A-02the SAAS Program for Excellent Research Team 2022(018)the Science and Technology Plan of the Science and Technology Department of Tibet Autonomous Region of China XZ202501ZY0029the Shanghai Agriculture Applied Technology Development Program 2019-02-08-00-08-F01109
6 · The paper itself

Abstract

backgroundSalt stress is a major abiotic stress that threatens crop production globally. Among various growth stages, seed germination, crucial for seedling establishment and crop population, is highly sensitive to salt stress. Therefore, it is essential to explore the molecular mechanisms at this stage for the breeding of salt-tolerant crops and global food security.

resultsIn this study, two salt-tolerant (B080 and B084) and two salt-sensitive (B004 and B005) naked barley landraces were exposed to salt stress for 7 days during germination and their transcriptome were compared to identify differentially expressed genes (DEGs) related to salt stress. In totally, 2348, 1847, 2251, and 1251 DEGs were obtained in B080, B084, B004, and B005, respectively. Then, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment of DEGs were analyzed. Eight DEGs were further validated by qPCR. Although there were only two genes significantly differential expressed, the upregulation and downregulation trends of all genes were consistent with mRNA-seq data.

conclusionsThe analysis of DEGs between salt-tolerant and salt-sensitive naked barley landraces under salt stress, as well as their GO and KEGG enrichment, could reveal and enrich the molecular mechanism of salt tolerance in naked barley.

Indexed as

GerminationHordeumSalt StressSalt ToleranceSalt-Tolerant PlantsTranscriptomeGene Expression ProfilingGene Expression Regulation, PlantGermination rateHordeum vulgare L.MRNA-seqNaCl treatmentQuantitative PCR

Identifiers

PMID41039240
PMCPMC12492895

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.