Evidence map›Paper›PMID 41037632›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Geometrical compartmentalization of trigger waves.

Zhengda Li, Kevin S Zhang, Yuping Chen, Sindy K Y Tang, James E Ferrell

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Geometrical compartmentalization of trigger waves.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Zhengda LiDepartment of Chemical and Systems Biology, Stanford University School of Medicine, Stanford, CA 94305-5174.
Kevin S ZhangDepartment of Mechanical Engineering, Stanford University, Stanford, CA 94305-3030.ORCID 0000-0002-3611-5550
Yuping ChenState Key Laboratory of Quantitative Synthetic Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, Guangdong, China.ORCID 0000-0002-9819-0230
Sindy K Y TangDepartment of Mechanical Engineering, Stanford University, Stanford, CA 94305-3030.ORCID 0000-0003-1465-2432
James E FerrellDepartment of Chemical and Systems Biology, Stanford University School of Medicine, Stanford, CA 94305-5174.ORCID 0000-0003-4767-3926

Funding

Cytoplasmic organization and systems-level function in Xenopus extractsR35GM131792 · NIGMS · STANFORD UNIVERSITY · PI JAMES E. FERRELL · 2019 to 2026
$5.6M
HHS | NIH (NIH) 5R35GM131792NIGMS NIH HHS R35 GM131792NSF (NSF) DBI-1548297
6 · The paper itself

Abstract

Trigger waves, self-regenerating fronts of biochemical activity that spread without losing speed or amplitude, are widespread in cell signaling. Apoptosis is one example of a process that propagates through the cytoplasm via trigger waves. Curiously, in some contexts, like synaptic pruning, apoptotic caspase activation is confined to specific subcellular regions. We hypothesized that at junctions between a thin cytoplasmic extension, like a dendritic spine, and a thicker one, like a dendrite, trigger wave propagation may be blocked even though diffusion is not, as a result of the general properties of trigger waves and bistable systems. This hypothesis was explored theoretically through modeling studies and dimensional arguments, which confirmed that trigger wave compartmentalization was possible and that the critical channel width required for compartmentalization was likely to be biologically relevant. These predictions were then tested experimentally with undiluted

Indexed as

ApoptosisCell CompartmentationModels, BiologicalSignal TransductionAnimalsCytoplasmXenopusXenopus laevisapoptosisbistabilitycytoplasmic compartmentalizationneuronal pruningtrigger waves

Identifiers

PMID41037632
PMCPMC12519175

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.