Evidence map›Paper›PMID 41037402›Full record

ArticleCell reports2025

Break-induced replication is activated to repair R-loop-associated double-strand breaks in SETX-deficient cells.

Tong Wu, Youhang Li, Yuqin Zhao, Sameer Bikram Shah, Linda Z Shi, Xiaohua Wu

Abstract read
In one paragraph

Article in Cell reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Mechanisms and genomic implications of break-induced replication.Nature structural & molecular biology · 2025
    Review
  8. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Tong WuDepartment of Molecular and Cell Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Youhang LiDepartment of Molecular and Cell Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Yuqin ZhaoDepartment of Molecular and Cell Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Sameer Bikram ShahDepartment of Molecular and Cell Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Linda Z ShiThe Institute of Engineering in Medicine, University of California, San Diego, San Diego, CA 92093, USA.
Xiaohua WuDepartment of Molecular and Cell Biology, The Scripps Research Institute, La Jolla, CA 92037, USA. Electronic address: xiaohwu@scripps.edu.

Funding

Study the mechanisms underlying common fragile site protectionR01CA187052 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI WU, XIAOHUA · 2015 to 2025
$4.2M
Investigating DNA polymerase O in replication stress and cancer therapyR01CA294646 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI Xiaohua Wu · 2024 to 2026
$3.0M
Investigating DNA double-strand break repair mechanisms in mammalian cellsR35GM141868 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI WU, XIAOHUA · 2021 to 2025
$2.5M
Study of Break-induced Replication in Mammalian CellsR01CA244912 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI WU, XIAOHUA · 2020 to 2024
$2.5M
NCI NIH HHS R01 CA187052NCI NIH HHS R01 CA244912NCI NIH HHS R01 CA294646NIGMS NIH HHS R35 GM141868
6 · The paper itself

Abstract

The primary role of break-induced replication (BIR) is to repair single-ended double-strand breaks (seDSBs) generated at broken replication forks and eroding telomeres. In this study, we demonstrated that when senataxin (SETX), an RNA/DNA helicase, is defective, hyper-recombination using the BIR mechanism is induced at R-loops/hybrid-accumulated double-ended DSBs (deDSBs), uncovering a role for BIR in the repair of R-loops/hybrids-associated deDSBs. Intriguingly, the loss of SETX not only triggers non-canonical hyper-end resection requiring RAD52 and XPF but also stalls Polα-primase-initiated end-fill DNA synthesis due to the accumulation of RNA/DNA hybrids on single-strand DNA (ssDNA) overhangs at deDSBs. This conflict between fill-in DNA synthesis and accumulated hybrids induces PCNA ubiquitination and PIF1 loading, thereby initiating the BIR mechanism at deDSBs. Hyper-resection further enhances PCNA ubiquitination and PIF1 loading, driving BIR-mediated hyper-recombination. Moreover, dysfunctional SETX is synthetic lethal with loss of PIF1, RAD52, or XPF, offering new strategies for targeted treatment of SETX-deficient tumors.

Indexed as

DNA Breaks, Double-StrandedDNA HelicasesDNA RepairDNA ReplicationR-Loop StructuresRNA HelicasesDNA-Binding ProteinsDNA, Single-StrandedHumansMultifunctional EnzymesProliferating Cell Nuclear AntigenRad52 DNA Repair and Recombination ProteinUbiquitinationDNA-Binding ProteinsDNA HelicasesDNA, Single-StrandedMultifunctional EnzymesProliferating Cell Nuclear AntigenRad52 DNA Repair and Recombination ProteinRAD52 protein, humanRNA HelicasesSETX protein, humanxeroderma pigmentosum group F proteinbreak-induced replicationCP: Molecular biologydouble-strand breakend resectionhomologous recombinationMRE11PIF1RAD52R-loopsenataxinXPF

Identifiers

PMID41037402
PMCPMC12667547

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.