Evidence map›Paper›PMID 41037000›Full record

Observational studyClinical cancer research : an official journal of the American Association for Cancer Research2025

Radiogenomic Profiling of Prostate Tumors prior to External Beam Radiotherapy Converges on a Transcriptomic Signature of TGF-β Activity Driving Tumor Recurrence.

Anson T Ku, Uma Shankavaram, Shana Y Trostel, Hong Zhang, Sumeyra Kartal, Houssein A Sater, Stephanie A Harmon, Nicole V Carrabba, Yang Liu, Hyunnam Ryu and 20 more

Abstract readObservational Study
In one paragraph

Observational study in Clinical cancer research : an official journal of the American Association for Cancer Research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

30 authors.

Anson T KuGenitourinary Malignancies Branch, National Cancer Institute, Bethesda, Maryland.ORCID 0000-0002-6471-5502
Uma ShankavaramRadiation Oncology Branch, National Cancer Institute, Bethesda, Maryland.ORCID 0000-0001-9659-0284
Shana Y TrostelGenitourinary Malignancies Branch, National Cancer Institute, Bethesda, Maryland.ORCID 0000-0002-5929-2576
Hong ZhangRadiation Oncology Branch, National Cancer Institute, Bethesda, Maryland.ORCID 0000-0001-7316-0214
Sumeyra KartalGenitourinary Malignancies Branch, National Cancer Institute, Bethesda, Maryland.ORCID 0000-0002-6728-7080
Houssein A SaterGenitourinary Malignancies Branch, National Cancer Institute, Bethesda, Maryland.ORCID 0000-0003-1975-3726
Stephanie A HarmonMolecular Imaging Branch, National Cancer Institute, Bethesda, Maryland.ORCID 0000-0002-2507-2399
Nicole V CarrabbaGenitourinary Malignancies Branch, National Cancer Institute, Bethesda, Maryland.ORCID 0000-0003-4118-9690
Yang LiuVeracyte, Inc., South San Francisco, California.ORCID 0009-0007-1986-7025
Hyunnam RyuVeracyte, Inc., South San Francisco, California.ORCID 0000-0002-8408-703X
James A ProudfootVeracyte, Inc., South San Francisco, California.ORCID 0009-0008-7063-5761
Boon Hao HongDivisions of Radiation Oncology and Medical Sciences, National Cancer Centre, Singapore, Singapore.ORCID 0000-0002-2822-7480
Bradford J WoodCenter for Interventional Oncology, NIH Clinical Center, Bethesda, Maryland.ORCID 0000-0002-4297-0051
Peter A PintoUrologic Oncology Branch, National Cancer Institute, Bethesda, Maryland.ORCID 0000-0002-0190-5931
Peter L ChoykeMolecular Imaging Branch, National Cancer Institute, Bethesda, Maryland.ORCID 0000-0003-1086-8826
Mack RoachUniversity of California San Francisco, San Francisco, California.ORCID 0000-0002-3546-8565
Howard M SandlerCedars-Sinai, Los Angeles, California.ORCID 0000-0002-8193-5769
Stephanie L PughNRG Oncology Statistics and Data Management Center, Philadelphia, Pennsylvania.ORCID 0000-0002-5977-8912
Kenneth L ZeitzerThomas Jefferson University Hospital, Philadelphia, Pennsylvania.ORCID 0009-0004-5744-9025
Lucas C MendezVerspeeten Family Cancer Centre, London, Ontario, Canada.ORCID 0000-0002-0440-3320
Nirav S KapadiaDepartment of Radiation Oncology and Applied Sciences, Dartmouth Cancer Center, Lebanon, New Hampshire.ORCID 0000-0001-7230-5784
William A HallMedical College of Wisconsin, Milwaukee, Wisconsin.ORCID 0000-0001-7017-6755
Anand B DesaiAkron City Hospital, Akron, Ohio.ORCID 0009-0003-9114-1246
Radka S StoyanovaDepartment of Radiation Oncology, University of Miami, Miami, Florida.ORCID 0000-0002-1301-3228
Alan PollackDepartment of Radiation Oncology, University of Miami, Miami, Florida.ORCID 0000-0002-1801-2865
Elai DavicioniVeracyte, Inc., South San Francisco, California.ORCID 0000-0001-9136-099X
Melvin L K ChuaDivisions of Radiation Oncology and Medical Sciences, National Cancer Centre, Singapore, Singapore.ORCID 0000-0002-1648-1473
Baris TurkbeyMolecular Imaging Branch, National Cancer Institute, Bethesda, Maryland.ORCID 0000-0003-0853-6494
Adam G SowalskyGenitourinary Malignancies Branch, National Cancer Institute, Bethesda, Maryland.ORCID 0000-0003-2760-1853
Deborah E CitrinRadiation Oncology Branch, National Cancer Institute, Bethesda, Maryland.ORCID 0000-0002-4391-2734

Funding

NRG Oncology Network Group Operations Center - GY9 BIQSFP Reports/BudgetsU10CA180868 · NCI · NRG ONCOLOGY FOUNDATION, INC. · PI NORMAN WOLMARK · 2014 to 2026
$206.8M
Statistics CoreU10CA180822 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Elaina Harper · 2014 to 2026
$146.4M
NRG Oncology NCORP Research Base-BIQSFPUG1CA189867 · NCI · NRG ONCOLOGY FOUNDATION, INC. · PI Deborah Watkins Bruner, Lisa A. Kachnic · 2014 to 2026
$140.5M
NRG Oncology Biospecimen BankU24CA196067 · NCI · NRG ONCOLOGY FOUNDATION, INC. · PI Tanner J. Freeman, Nilsa Del Carmen Ramirez Milan · 2015 to 2026
$42.6M
Tumor Biology Research ProgramP30CA240139 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI George S. Grills · 2019 to 2026
$24.1M
Targeting mechanisms of radiation resistanceZIABC011552 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI CITRIN, DEBORAH · 2014 to 2025
$12.2M
Molecular alterations driving the development of primary prostate cancersZIABC011679 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SOWALSKY, ADAM · 2016 to 2025
$6.9M
Multi-cohort validation of machine learning radiogenomic models (ML-RGx) to predict late toxicity in prostate cancerR01CA285801 · NCI · MEDICAL COLLEGE OF WISCONSIN · PI William Hall, Sarah L. Kerns · 2024 to 2026
$3.0M
Prostate Cancer Radio-Pathomics for Differentiating Clinically Significant DiseaseR01CA249882 · NCI · MEDICAL COLLEGE OF WISCONSIN · PI LAVIOLETTE, PETER S · 2021 to 2025
$3.0M
MRI Imaging and Biomarkers for Early Detection of Aggressive Prostate CancerU01CA239141 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI POLLACK, ALAN, PUNNEN, SANOJ · 2019 to 2023
$3.0M
Institutional Career Development CoreKL2TR001438 · NCATS · MEDICAL COLLEGE OF WISCONSIN · PI WIDLANSKY, MICHAEL E · 2015 to 2024
$2.9M
Machine learning accelerated on-line adaptive replanningR01CA247960 · NCI · MEDICAL COLLEGE OF WISCONSIN · PI PAULSON, ERIC S · 2020 to 2024
$2.4M
Congressionally Directed Medical Research Programs (CDMRP) W81XWH-22-1-0067Intramural NIH HHS ZIA BC011552Intramural NIH HHS ZIA BC011679National Cancer Institute (NCI) U01 AI18390National Cancer Institute (NCI) U01CA239141NCATS NIH HHS KL2 TR001438NCI NIH HHS P30 CA240139NCI NIH HHS R01 CA247960NCI NIH HHS R01 CA249882NCI NIH HHS R01 CA285801NCI NIH HHS U01 CA239141NCI NIH HHS U10 CA180822NCI NIH HHS U10 CA180868NCI NIH HHS U24 CA196067NCI NIH HHS UG1 CA189867NIAID NIH HHS U01 AI183904Prostate Cancer Foundation (PCF)
6 · The paper itself

Abstract

purposeClinical risk grouping based on PSA, tumor grade, and disease extent guides treatment intensity for localized prostate cancer. However, many patients with intermediate- or high-risk disease treated with external beam radiotherapy (EBRT) and androgen deprivation therapy (ADT) still develop biochemical recurrence (BCR). Early identification of patients at high risk for BCR could enable personalized treatment strategies. EXPERIMENTAL

designWe prospectively enrolled 29 patients with intermediate- or high-risk prostate cancer undergoing EBRT and ADT. Pretreatment biopsies (n = 60) underwent whole-transcriptome microarray and whole-exome sequencing. Patients received multiparametric MRI at baseline and 6 months after treatment, with a median follow-up of 6 years. Gene expression differences between patients with and without BCR were analyzed using pathway tools and validated in external datasets. A novel TGF-β gene signature was derived and tested across multiple cohorts (median follow-up: 5-11 years).

resultsTGF-β activity was significantly associated with BCR in the discovery cohort (P = 0.0081) and correlated with PTEN/TP53 alterations (P = 0.0246) and baseline multiparametric MRI tumor volume (P = 0.026). TGF-β activity also predicted metastasis-free survival (P = 0.037) and, in an independent cohort (n = 265), was prognostic for BCR-free (P = 0.05), metastasis-free (P < 0.001), and overall survival (P < 0.001).

conclusionsTGF-β activity is a dominant feature of intermediate- to unfavorable-risk prostate tumors prone to biochemical failure after EBRT with ADT and may serve as an independent prognostic biomarker beyond existing clinical criteria.

Indexed as

ChemoradiotherapyImaging GenomicsNeoplasm Recurrence, LocalProstatic NeoplasmsRadiation GenomicsTransforming Growth Factor betaAgedAndrogen AntagonistsExome SequencingFollow-Up StudiesGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMaleMiddle AgedMultiparametric Magnetic Resonance ImagingAndrogen AntagonistsProstate-Specific AntigenTransforming Growth Factor beta

Identifiers

PMID41037000
PMCPMC12703358

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.