Evidence map›Paper›PMID 41036867›Full record

ArticleMicrobiology resource announcements2025

A catalog of metagenome-assembled genomes from Amazonian forest and pasture soils.

Andressa M Venturini, Júlia B Gontijo, Louis Berrios, Jorge L Mazza Rodrigues, Kabir G Peay, Siu M Tsai

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microbiology resource announcements, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Andressa M VenturiniDepartment of Biology, Stanford University, Stanford, California, USA.ORCID 0000-0002-5901-1658
Júlia B GontijoDepartment of Land, Air, and Water Resources, University of California Davis, Davis, California, USA.ORCID 0000-0003-1942-7242
Louis BerriosDepartment of Biology, Stanford University, Stanford, California, USA.ORCID 0000-0003-3888-9928
Jorge L Mazza RodriguesDepartment of Land, Air, and Water Resources, University of California Davis, Davis, California, USA.ORCID 0000-0002-6446-6462
Kabir G Peay *Department of Biology, Stanford University, Stanford, California, USA.ORCID 0000-0002-7998-7412
Siu M Tsai *Cell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, São Paulo, Brazil.ORCID 0000-0002-3733-6312

Funding

CIFAR Fungal Kingdom: Threats and OpportunitiesConselho Nacional de Desenvolvimento Científico e Tecnológico 133769/2015-1Conselho Nacional de Desenvolvimento Científico e Tecnológico 140032/2015-0Conselho Nacional de Desenvolvimento Científico e Tecnológico 311008/2016-0Conselho Nacional de Desenvolvimento Científico e Tecnológico 314806/2021-0Coordenação de Aperfeiçoamento de Pessoal de Nível Superior Finance Code 001Fundação de Amparo à Pesquisa do Estado de São Paulo 2014/50320-4Fundação de Amparo à Pesquisa do Estado de São Paulo 2015/13546-7Fundação de Amparo à Pesquisa do Estado de São Paulo 2018/14974-0National Science Foundation DEB 1442214National Science Foundation DEB 1952687National Science Foundation PRFB 2109481Stanford Doerr School of Sustainability Discovery Grant
6 · The paper itself

Abstract

The Amazon rainforest is facing multifaceted anthropogenic pressures, and we previously showed that forest-to-pasture conversion has led to soil microbial communities with distinct genomic traits. Here, we present 69 archaeal and bacterial metagenome-assembled genomes and detail their virulence- and antimicrobial resistance-associated genes.

Indexed as

Amazon rainforestantimicrobial resistance genesarchaeabacteriadeforestationland-use changemetagenomicssoil microbiologyvirulence genes

Identifiers

PMID41036867
PMCPMC12613873

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.