Evidence map›Paper›PMID 41036621›Full record

ArticleNucleic acids research2025

Iron-sensitive RNA regulation by poly C-binding proteins.

Grant A Goda, Kwame Forbes, Michael E Sullivan, Grace A Eramo, Conner Breen, Douglas F Porter, Paul A Khavari, Daniel Dominguez, Maria M Aleman

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Grant A GodaDepartment of Chemistry, University of North Carolina, Chapel Hill, NC 27599, United States.ORCID 0000-0002-7325-2490
Kwame ForbesDepartment of Pharmacology, University of North Carolina, Chapel Hill, NC 27599, United States.ORCID 0000-0002-9781-7900
Michael E SullivanDepartment of Pharmacology, University of North Carolina, Chapel Hill, NC 27599, United States.ORCID 0009-0000-9238-4846
Grace A EramoDepartment of Pharmacology, University of North Carolina, Chapel Hill, NC 27599, United States.ORCID 0009-0000-4900-5812
Conner BreenDepartment of Pharmacology, University of North Carolina, Chapel Hill, NC 27599, United States.
Douglas F PorterProgram in Epithelial Biology, Stanford University, Stanford, CA 94305, United States.
Paul A KhavariProgram in Epithelial Biology, Stanford University, Stanford, CA 94305, United States.
Daniel DominguezDepartment of Pharmacology, University of North Carolina, Chapel Hill, NC 27599, United States.ORCID 0000-0002-8630-2776
Maria M AlemanDepartment of Pharmacology, University of North Carolina, Chapel Hill, NC 27599, United States.ORCID 0000-0002-1714-0363

Funding

Pre-doctoral Training Program in Integrative Vascular BiologyT32HL069768 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Christopher P. Mack · 2002 to 2026
$9.7M
Fibrinogen and Factor XIII in Venous ThrombosisR01HL126974 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Alisa S. Wolberg · 2016 to 2026
$4.4M
Predoctoral Training in the Pharmacological SciencesT32GM135095 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Joseph Mauro Calabrese, Michael James Emanuele · 2020 to 2026
$3.6M
TRIO NRSA Training CoreTL1DK139567 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Graca Duarte Almeida-Porada, Steven D Crowley · 2023 to 2026
$3.3M
Protein Disorder as a Modifier of RNA Binding and RegulationR35GM142864 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Daniel Issac Dominguez · 2021 to 2026
$2.5M
Iron-sensitive RNA regulation during erythropoiesisR01DK124773 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ALEMAN, MARIA M. · 2020 to 2024
$2.0M
Predoctoral Training Program in Bioinformatics and Computational BiologyT32GM135123 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Michael Isaiah Love, William Valdar · 2021 to 2026
$1.7M
NHLBI NIH HHS R01 HL126974NHLBI NIH HHS T32 HL069768NIDDK NIH HHS R01 DK124773NIDDK NIH HHS TL1 DK139567NIGMS NIH HHS R35 GM142864NIGMS NIH HHS T32 GM135095NIGMS NIH HHS T32 GM135123NIH HHS R01DK124773NIH HHS R01HL126974NIH HHS R35GM142864NIH HHS T32GM135095NIH HHS T32HL069768NIH HHS TL1DK139567UNC Chapel Hill
6 · The paper itself

Abstract

Iron is essential for normal cellular function. Homeostatic responses to low iron availability have long been known to rely on posttranscriptional mechanisms. Poly C-binding proteins (PCBPs) are essential RNA-binding proteins that regulate alternative splicing (AS), translation, and RNA stability. They also serve as critical iron chaperones that manage intracellular iron flux. However, the impact of cellular iron levels on the PCBP-directed transcriptome has not been globally evaluated. We found broad transcriptome changes, including AS, in response to low iron availability consistent with numerous operant posttranscriptional mechanisms that sense iron. By comparing AS directed by PCBP1 and PCBP2 to the iron-sensitive transcriptome, we found genes with iron-sensitive PCBP-mediated splicing regulation. We also found that iron chelation-induced splicing changes were attenuated with knockdown of PCBPs. Further, we demonstrate that iron chelation or mutation of PCBP1 iron binding residues enhances PCBP1 RNA association. This work highlights widespread iron-sensitive RNA regulation and identifies PCBP1 and PCBP2 as critical splicing factors contributing to this response.

Indexed as

Alternative SplicingHeterogeneous-Nuclear RibonucleoproteinsIronRNA-Binding ProteinsDNA-Binding ProteinsGene Expression RegulationHumansIron Chelating AgentsRNATranscriptomeDNA-Binding ProteinsHeterogeneous-Nuclear RibonucleoproteinsIronIron Chelating AgentsPCBP1 protein, humanPCBP2 protein, humanRNARNA-Binding Proteins

Identifiers

PMID41036621
PMCPMC12481019

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.