Evidence map›Paper›PMID 41035323›Full record

ArticlePhilosophical transactions of the Royal Society of London. Series B, Biological sciences2025

Modelling the prebiotic origins of regulation and agency in evolving protocell ecologies.

Ben Shirt-Ediss, Arián Ferrero-Fernández, Daniele De Martino, Leonardo Bich, Alvaro Moreno, Kepa Ruiz-Mirazo

Abstract read
In one paragraph

Article in Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Modelling the prebiotic origins of regulation and agency in evolving protocell ecologies.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Article
  3. Origins of life: the possible and the actual.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ben Shirt-EdissDIPC (Donostia International Physics Center -- CSIC, UPV/EHU), Donostia - San Sebastián E20018, Spain.
Arián Ferrero-FernándezBiofisika Institute (CSIC, UPV/EHU), 48940 Leioa, Spain.
Daniele De MartinoBiofisika Institute (CSIC, UPV/EHU), 48940 Leioa, Spain.
Leonardo BichDepartment of Philosophy, University of the Basque Country, Donostia - San Sebastián E20018, Spain.
Alvaro MorenoDIPC (Donostia International Physics Center -- CSIC, UPV/EHU), Donostia - San Sebastián E20018, Spain.
Kepa Ruiz-MirazoBiofisika Institute (CSIC, UPV/EHU), 48940 Leioa, Spain.ORCID 0000-0002-0157-4394

Funding

Eusko JaurlaritzaJohn Templeton FoundationMinisterio de Ciencia y Tecnología
6 · The paper itself

Abstract

How and why did natural systems develop the first mechanisms of regulation? How could they turn into adaptive agents in a minimal (though deeply meaningful) biological sense? A novel simulation platform, Araudia, has been implemented to address these tightly interrelated questions, in a prebiotic scenario where metabolically diverse protocells are allowed to modify their dynamic behaviour in response to changes in their boundary conditions (e.g. nutrient concentrations in the medium) and/or in the activity of other protocells, including cross-feeding relationships. On these lines, we extend 'consumer-resource models' to a stochastic evolutionary framework in which novelty appears

Indexed as

Artificial CellsBiological EvolutionModels, BiologicalOrigin of LifePrebioticsPrebioticsadaptive agencyCRMs (consumer–resource models)ecopoiesisminimal metabolismprebiotic systems evolutionregulation

Identifiers

PMID41035323
PMCPMC12489503

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.