Evidence map›Paper›PMID 41035065›Full record

ReviewGenome biology2025

The rise of historical epigenomics and temporal analysis of gene regulation.

Clare E Holleley, Erin E Hahn

Abstract readReview
In one paragraph

Review in Genome biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Clare E HolleleyNational Research Collections Australia, Commonwealth Scientific Industrial Research Organisation, Canberra, ACT, 2601, Australia. clare.holleley@csiro.au.ORCID http://orcid.org/0000-0002-5257-0019
Erin E HahnNational Research Collections Australia, Commonwealth Scientific Industrial Research Organisation, Canberra, ACT, 2601, Australia.ORCID http://orcid.org/0000-0001-6459-9508

Funding

Environomics CSIRO Future Science Platform R-10011 and R-14486
6 · The paper itself

Abstract

Complex diseases driven by gene-environment interactions impose a heavy burden on human and animal health. Addressing these challenges requires innovative research. The emerging field of historical epigenomics offers a promising opportunity to link genotypes with phenotypes using preserved biological material. New methods such as historical chromatin profiling in museum specimens provide valuable insights into vertebrate genome regulation. Building on successful work with formalin-fixed paraffin-embedded (FFPE) samples, we expect growing interest in using historical specimens for biomedical, evolutionary, and ecological research. Applied to historical collections, these tools can provide critical baselines for understanding modern diseases, environmental stressors, and human adaptation.

Indexed as

Epigenesis, GeneticEpigenomicsGene Expression RegulationAnimalsGene-Environment InteractionHumansChromatin accessibilityDNAEpigeneticsFormaldehydeFormalin-fixedGene expressionGenomeMuseomicsMuseumMuseum epigenomics

Identifiers

PMID41035065
PMCPMC12487146

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.