Evidence map›Paper›PMID 41034579›Full record

ArticleNature2025

The Panoptes system uses decoy cyclic nucleotides to defend against phage.

Ashley E Sullivan, Ali Nabhani, Daniel S Izrailevsky, Kate Schinkel, Charlotte R K Hoffman, Laurel K Robbins, Toni A Nagy, Melissa L Duncan, Hannah E Ledvina, Annette H Erbse and 9 more

Abstract read
In one paragraph

Article in Nature, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. How bacterial immune systems sense phage infection.Nature reviews. Microbiology · 2026
    Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Balancing of immune activation and suppression during phage infection.bioRxiv : the preprint server for biology · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors.

Ashley E SullivanDepartment of Biochemistry, University of Colorado Boulder, Boulder, CO, USA.ORCID 0000-0003-4984-328X
Ali NabhaniDepartment of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, CA, USA.ORCID 0000-0001-7103-8573
Daniel S IzrailevskyDepartment of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, CA, USA.ORCID 0009-0000-1148-4539
Kate SchinkelDepartment of Biochemistry, University of Colorado Boulder, Boulder, CO, USA.
Charlotte R K HoffmanDepartment of Biochemistry, University of Colorado Boulder, Boulder, CO, USA.ORCID 0009-0006-0766-5509
Laurel K RobbinsDepartment of Biochemistry, University of Colorado Boulder, Boulder, CO, USA.
Toni A NagyDepartment of Biochemistry, University of Colorado Boulder, Boulder, CO, USA.
Melissa L DuncanDepartment of Biochemistry, University of Colorado Boulder, Boulder, CO, USA.
Hannah E LedvinaDepartment of Biochemistry, University of Colorado Boulder, Boulder, CO, USA.
Annette H ErbseDepartment of Biochemistry, University of Colorado Boulder, Boulder, CO, USA.
Emily M KibbyDepartment of Biochemistry, University of Colorado Boulder, Boulder, CO, USA.
Uday TakDepartment of Biochemistry, University of Colorado Boulder, Boulder, CO, USA.
David M DinhDepartment of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, CA, USA.
Eirene Marie Q EdnacotDepartment of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, CA, USA.
Christy M NguyenDepartment of Biological Chemistry, University of California, Irvine, Irvine, CA, USA.ORCID 0000-0002-3897-6207
A Maxwell BurroughsComputational Biology Branch, Division of Intramural Research, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.ORCID 0000-0002-2229-8771
L AravindComputational Biology Branch, Division of Intramural Research, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.ORCID 0000-0003-0771-253X
Aaron T WhiteleyDepartment of Biochemistry, University of Colorado Boulder, Boulder, CO, USA. aaron.whiteley@colorado.edu.ORCID 0000-0002-0075-7519
Benjamin R MorehouseDepartment of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, CA, USA. b.morehouse@uci.edu.ORCID 0000-0003-3352-5463

Funding

A Synchrotron Radiation Structural Biology ResourcesP30GM133894 · NIGMS · STANFORD UNIVERSITY · PI Aina E. Cohen, KEITH O HODGSON · 2020 to 2026
$43.3M
User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI PAUL David ADAMS · 2017 to 2026
$28.6M
Evolutionary Analysis and Comparative Genomics of Protein SuperfamiliesZIALM594244 · NLM · NATIONAL LIBRARY OF MEDICINE · PI ARAVIND, L · 2009 to 2025
$20.3M
TRAINING IN SIGNAL TRANSDUCTION &CELL CYCLE REGULATIONT32GM008759 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI AHN, NATALIE G. · 2000 to 2020
$5.9M
Predoctoral Training Program in Signaling and Cellular Regulation INCLUDE Down Syndrome SupplementT32GM142607 · NIGMS · UNIVERSITY OF COLORADO · PI Sabrina Leigh Spencer, Tin Tin Su · 2021 to 2026
$3.6M
Interdisciplinary Predoctoral Training in Molecular BiophysicsT32GM145437 · NIGMS · UNIVERSITY OF COLORADO · PI JOSEPH J FALKE · 2022 to 2026
$2.5M
Research Supplements to Promote Diversity in Health-Related Research (Admin Supp - Clinical Trial Not Allowed)DP2AT012346 · NCCIH · UNIVERSITY OF COLORADO · PI WHITELEY, AARON THOMAS · 2022 to 2025
$2.4M
Defining the mechanisms that drive novel cyclic nucleotide signaling in immune defenseR35GM157311 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI Benjamin Robert Morehouse · 2025 to 2026
$760k
Modernization/operational improvements to basic centrifugation infrastructure of the Shared Instruments Pool in the Department of Biochemistry University of Colorado BoulderR24OD033699 · OD · UNIVERSITY OF COLORADO · PI ERBSE, ANNETTE H · 2022 to 2022
$143k
Purchase of an Isothermal Titration CalorimeterS10RR026516 · NCRR · UNIVERSITY OF COLORADO · PI BATEY, ROBERT T · 2010 to 2010
$129k
Understanding the role of ubiquitination-like processes in bacterial antiviral immunityF31AI186492 · NIAID · UNIVERSITY OF COLORADO · PI Ashley Elizabeth Sullivan · 2025 to 2026
$86k
Intramural NIH HHS ZIA LM594244NCCIH NIH HHS DP2 AT012346NCRR NIH HHS S10 RR026516NIAID NIH HHS F31 AI186492NIGMS NIH HHS P30 GM124169NIGMS NIH HHS P30 GM133894NIGMS NIH HHS R35 GM157311NIGMS NIH HHS T32 GM008759NIGMS NIH HHS T32 GM142607NIGMS NIH HHS T32 GM145437NIH HHS R24 OD033699
6 · The paper itself

Abstract

Bacteria combat phage infection using antiphage systems and many systems generate nucleotide-derived second messengers upon infection that activate effector proteins to mediate immunity

Indexed as

BacteriophagesNucleotides, CyclicOperonSecond Messenger SystemsCRISPR-Cas SystemsCrystallography, X-RayDinucleoside PhosphatesModels, MolecularProtein DomainsViral Proteinscyclic diadenosine phosphateDinucleoside PhosphatesNucleotides, CyclicViral Proteins

Identifiers

PMID41034579
PMCPMC12657218

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.