Evidence map›Paper›PMID 41034532›Full record

ArticleNature2025

Connecting chemical and protein sequence space to predict biocatalytic reactions.

Alexandra E Paton, Daniil A Boiko, Jonathan C Perkins, Nicholas I Cemalovic, Thiago Reschützegger, Gabe Gomes, Alison R H Narayan

Abstract read
In one paragraph

Article in Nature, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. High-throughput physics-based enzyme engineering.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Article
  4. Applications and limitations of AI tools in enzyme design.Protein science : a publication of the Protein Society · 2026
    Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Advances in Machine Learning Models for Predicting Enzyme Kinetic Parameters.Journal of chemical information and modeling · 2026
    Review
  12. Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Alexandra E PatonLife Sciences Institute, University of Michigan, Ann Arbor, MI, USA.
Daniil A BoikoDepartment of Chemical Engineering, Carnegie Mellon University, Pittsburgh, PA, USA.
Jonathan C PerkinsLife Sciences Institute, University of Michigan, Ann Arbor, MI, USA.
Nicholas I CemalovicLife Sciences Institute, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0001-9438-5172
Thiago ReschützeggerDepartment of Chemical Engineering, Federal University of Santa Maria, Santa Maria, Brazil.ORCID 0000-0002-9793-3450
Gabe GomesDepartment of Chemical Engineering, Carnegie Mellon University, Pittsburgh, PA, USA. gabegomes@cmu.edu.ORCID 0000-0002-8235-5969
Alison R H NarayanLife Sciences Institute, University of Michigan, Ann Arbor, MI, USA. arhardin@umich.edu.ORCID 0000-0001-8290-0077

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The application of biocatalysis in synthesis has the potential to offer streamlined routes towards target molecules

Indexed as

BiocatalysisEnzymesAmino Acid SequenceHigh-Throughput Screening AssaysKetoglutaric AcidsSubstrate SpecificityEnzymesKetoglutaric Acids

Identifiers

PMID41034532
PMCPMC12488478

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.