Evidence map›Paper›PMID 41034344›Full record

ArticleNature microbiology2025

Structure of a distinct β-barrel assembly machinery complex in the Bacteroidota.

Augustinas Silale, Mariusz Madej, Katarzyna Mikruta, Andrew M Frey, Adam J Hart, Arnaud Baslé, Carsten Scavenius, Jan J Enghild, Matthias Trost, Robert P Hirt and 1 more

Abstract read
In one paragraph

Article in Nature microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Identification and characterization of the functional LolB ortholog inbioRxiv : the preprint server for biology · 2026
    Article
  5. Discovery and characterization of an anti-Frontiers in microbiology · 2026
    Article
  6. Bam complex redefined in Bacteroidota.Nature microbiology · 2025
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Augustinas Silale *Biosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0003-3338-2087
Mariusz Madej *Department of Microbiology, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Krakow, Poland. mariusz.madej@uj.edu.pl.
Katarzyna MikrutaDepartment of Microbiology, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Krakow, Poland.ORCID http://orcid.org/0000-0002-6118-489X
Andrew M FreyBiosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0002-5194-447X
Adam J HartBiosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0009-0006-4092-2132
Arnaud BasléBiosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.
Carsten ScaveniusInterdisciplinary Nanoscience Center (iNANO), Aarhus University, Aarhus, Denmark.ORCID http://orcid.org/0000-0002-4304-0681
Jan J EnghildInterdisciplinary Nanoscience Center (iNANO), Aarhus University, Aarhus, Denmark.ORCID http://orcid.org/0000-0001-9292-9172
Matthias TrostBiosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0002-5732-700X
Robert P HirtBiosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.
Bert van den BergBiosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK. bert.van-den-berg@newcastle.ac.uk.ORCID http://orcid.org/0000-0003-1966-8804

Funding

Wellcome Trust
6 · The paper itself

Abstract

The Gram-negative β-barrel assembly machinery (BAM) complex catalyses the folding and membrane insertion of newly synthesized β-barrel outer membrane proteins. The BAM is structurally conserved, but most studies have focused on Gammaproteobacteria. Here, using single-particle cryogenic electron microscopy, quantitative proteomics and functional assays, we show that the BAM complex is distinct within the Bacteroidota. Cryogenic electron microscopy structures of BAM complexes from the human gut symbiont Bacteroides thetaiotaomicron (3.3 Å) and the human oral pathogen Porphyromonas gingivalis (3.2 Å) show similar, seven-component complexes of ~325 kDa. The complexes are mostly extracellular and comprise canonical BamA and BamD; an integral, essential outer membrane protein, BamG, that associates with BamA; and four surface-exposed lipoproteins: BamH-K. Absent from the BAM in Pseudomonadota, BamG-K form a large, extracellular dome that may confer additional functionality to enable the folding and assembly of β-barrel-surface-exposed lipoprotein complexes that are a hallmark of the Bacteroidota. Our findings develop our understanding of fundamental biological processes in an important bacterial phylum.

Indexed as

Bacterial Outer Membrane ProteinsBacteroides thetaiotaomicronPorphyromonas gingivalisCryoelectron MicroscopyHumansLipoproteinsModels, MolecularProtein FoldingProteomicsBacterial Outer Membrane ProteinsLipoproteins

Identifiers

PMID41034344
PMCPMC12578637

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.