Evidence map›Paper›PMID 41033305›Full record

ArticleNeuron2025

Ultra-high-density Neuropixels probes improve detection and identification in neuronal recordings.

Zhiwen Ye, Andrew M Shelton, Jordan R Shaker, Julien Boussard, Jennifer Colonell, Daniel Birman, Sahar Manavi, Susu Chen, Charlie Windolf, Cole Hurwitz and 24 more

Abstract read
In one paragraph

Article in Neuron, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
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  3. Review
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  7. Review
  8. Fabrication of High-Density Multimodal Neural Probes Based on Heterogeneously Integrated CMOS.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Extracellular Spike Waveforms: Morphology, Biophysics, and Classification Strategies.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2026
    Review
  13. Article
  14. Neuropixels reveal laminar microcircuit organization in monkey V1 in vivo.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Neuropixels reveal structure-function relationships in monkey V1bioRxiv : the preprint server for biology · 2025
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

34 authors.

Zhiwen YeDepartment of Neurobiology and Biophysics, University of Washington, Seattle, WA, USA.
Andrew M SheltonMindScope Program, Allen Institute, Seattle, WA, USA; Allen Institute for Neural Dynamics, Seattle, WA, USA.
Jordan R ShakerDepartment of Neurobiology and Biophysics, University of Washington, Seattle, WA, USA.
Julien BoussardZuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA; Department of Statistics, Columbia University, New York, NY, USA.
Jennifer ColonellJanelia Research Campus, Ashburn, VA, USA.
Daniel BirmanDepartment of Neurobiology and Biophysics, University of Washington, Seattle, WA, USA.
Sahar ManaviMindScope Program, Allen Institute, Seattle, WA, USA.
Susu ChenJanelia Research Campus, Ashburn, VA, USA.
Charlie WindolfZuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA; Department of Statistics, Columbia University, New York, NY, USA.
Cole HurwitzZuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA.
Han YuZuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA; Department of Electrical Engineering, Columbia University, New York, NY, USA.
Tomoyuki NamimaDepartment of Neurobiology and Biophysics, University of Washington, Seattle, WA, USA; Washington National Primate Research Center, Seattle, WA, USA; Graduate School of Frontier Biosciences, The University of Osaka, Suita, Japan; Center for Information and Neural Networks (CiNet), National Institute of Information and Communications Technology (NICT), Suita, Japan.
Federico PedrajaZuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA.
Shahaf WeissMax Planck Institute for Brain Research, Frankfurt, Germany.
Bogdan C RaducanuIMEC, Leuven, Belgium.
Torbjørn V NessDepartment of Physics, Norwegian University of Life Sciences, Ås, Norway.
Xiaoxuan JiaSchool of Life Sciences & IDG/McGovern Institute for Brain Research, Tsinghua University, Beijing, China.
Giulia MastroberardinoUCL Institute of Ophthalmology, University College London, London, UK; Wolfson Institute for Biomedical Research, University College London, London, UK.
L Federico RossiCenter for Neuroscience and Cognitive Systems, Istituto Italiano di Tecnologia, Rovereto, Italy.
Matteo CarandiniUCL Institute of Ophthalmology, University College London, London, UK.
Michael HäusserWolfson Institute for Biomedical Research, University College London, London, UK; School of Biomedical Sciences, The University of Hong Kong, Hong Kong, China.
Gaute T EinevollDepartment of Physics, Norwegian University of Life Sciences, Ås, Norway; Department of Physics, University of Oslo, Oslo, Norway.
Gilles LaurentMax Planck Institute for Brain Research, Frankfurt, Germany.
Nathaniel B SawtellZuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA.
Wyeth BairDepartment of Neurobiology and Biophysics, University of Washington, Seattle, WA, USA; Washington National Primate Research Center, Seattle, WA, USA.
Anitha PasupathyDepartment of Neurobiology and Biophysics, University of Washington, Seattle, WA, USA; Washington National Primate Research Center, Seattle, WA, USA.
Carolina Mora LopezIMEC, Leuven, Belgium.
Barundeb DuttaIMEC, Leuven, Belgium.
Liam PaninskiZuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA; Department of Statistics, Columbia University, New York, NY, USA.
Joshua H SiegleAllen Institute for Neural Dynamics, Seattle, WA, USA.
Christof KochMindScope Program, Allen Institute, Seattle, WA, USA.
Shawn R OlsenMindScope Program, Allen Institute, Seattle, WA, USA; Allen Institute for Neural Dynamics, Seattle, WA, USA.
Timothy D HarrisJanelia Research Campus, Ashburn, VA, USA; Biomedical Engineering Department, Johns Hopkins University, Baltimore, MD, USA.
Nicholas A SteinmetzDepartment of Neurobiology and Biophysics, University of Washington, Seattle, WA, USA. Electronic address: nick.steinmetz@gmail.com.

Funding

NeuropixelsUltra: Dense arrays for stable, unbiased, and cell type-specific electrical imagingU01NS113252 · NINDS · UNIVERSITY OF WASHINGTON · PI HARRIS, TIMOTHY D, OLSEN, SHAWN R. · 2019 to 2023
$3.8M
Understanding Multi-Layer Learning in a Biological CircuitR01NS118448 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ABBOTT, LAURENCE F., SAWTELL, NATHANIEL · 2023 to 2024
$865k
NINDS NIH HHS R01 NS118448NINDS NIH HHS U01 NS113252
6 · The paper itself

Abstract

To understand the neural basis of behavior, it is essential to sensitively and accurately measure neural activity at single-neuron and single-spike resolution. Extracellular electrophysiology delivers this, but it has biases in the neurons it detects and it imperfectly resolves their action potentials. To minimize these limitations, we developed a silicon probe with much smaller and denser recording sites than previous designs, called Neuropixels Ultra (NP Ultra). Using NP Ultra, neuronal yield in mouse visual cortex recordings increased by more than 2-fold. With ultra-high spatial resolution, we discovered that a feature of extracellular waveforms, the spatial extent or "footprint," distinguished axonal from somatic recordings. In addition, three genetically identified cortical cell types could be discriminated from one another with ∼80% accuracy and from other neurons with ∼85% accuracy. NP Ultra improves yield, detection of subcellular compartments, and cell type identification to enable a more powerful dissection of neural circuit activity during behavior.

Indexed as

Action PotentialsNeuronsVisual CortexAnimalsMiceMice, Inbred C57BLMice, TransgenicSiliconSiliconcell type classificationextracellular electrophysiologyNeuropixels probeneuroscienceoptotaggingprobe designsubcellular recordingwhole-brain mapping

Identifiers

PMID41033305
PMCPMC12981004

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.