Evidence map›Paper›PMID 41032588›Full record

ArticleScience advances2025

Restriction of HIV-1 infectivity by interferon and IFITM3 is counteracted by Nef.

Mahesh Agarwal, Kin Kui Lai, Isaiah Wilt, Saliha Majdoul, Abigail A Jolley, Mary Lewinski, Alex A Compton

Abstract read
In one paragraph

Article in Science advances, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Review
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  5. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Mahesh AgarwalCenter for Cancer Research, National Cancer Institute, Frederick, MD, USA.ORCID 0009-0003-1988-1629
Kin Kui LaiCenter for Cancer Research, National Cancer Institute, Frederick, MD, USA.ORCID 0000-0003-2694-6243
Isaiah WiltCenter for Cancer Research, National Cancer Institute, Frederick, MD, USA.
Saliha MajdoulCenter for Cancer Research, National Cancer Institute, Frederick, MD, USA.ORCID 0000-0002-0530-6354
Abigail A JolleyCenter for Cancer Research, National Cancer Institute, Frederick, MD, USA.
Mary LewinskiDepartment of Medicine, University of California San Diego, La Jolla, CA, USA.ORCID 0000-0002-3784-9660
Alex A ComptonCenter for Cancer Research, National Cancer Institute, Frederick, MD, USA.ORCID 0000-0002-7508-4953

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The viral accessory protein Nef is a major determinant of HIV-1 pathogenicity in vivo. Nef is a multifunctional, immunomodulatory protein that downmodulates cell surface proteins, including CD4 and MHC class I (MHC-I), which are important for T cell-mediated immunity. In addition, Nef also regulates cell-intrinsic immunity-Nef boosts the infectivity of virions produced and released from HIV-infected cells, at least in part, by counteracting the antiviral activity of transmembrane proteins SERINC3 and SERINC5. Here, we show that Nef proteins derived from many primary isolates of HIV-1 restore infectivity in interferon-treated cells and confer resistance to the antiviral protein interferon-induced transmembrane protein 3 (IFITM3) in a SERINC3/5-independent manner. Using Nef derived from primary HIV-1 clade C infection, we found that Nef interacts with IFITM3 in membranes, reduces IFITM3 incorporation into HIV-1 virions, and restores HIV-1 fusion with target cells. Our findings reveal a previously unrecognized immunomodulatory role for Nef in the setting of the interferon-induced antiviral state during HIV-1 infection.

Indexed as

HIV-1HIV InfectionsInterferonsMembrane Proteinsnef Gene Products, Human Immunodeficiency VirusRNA-Binding ProteinsHEK293 CellsHost-Pathogen InteractionsHumansMembrane GlycoproteinsProtein BindingVirionIFITM3 protein, humanInterferonsMembrane GlycoproteinsMembrane Proteinsnef Gene Products, Human Immunodeficiency Virusnef protein, Human immunodeficiency virus 1RNA-Binding ProteinsSERINC3 protein, humanSERINC5 protein, human

Identifiers

PMID41032588
PMCPMC12487890

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.