Evidence map›Paper›PMID 41031300›Full record

ArticleFrontiers in plant science2025

Harnessing chloroplast SSRs to decipher genetic diversity in underutilized

Yogesh P Khade, Pawan Mainkar, Aniket Chandanshive, Krishna Madhav Rai, Shalaka R Sinhasane, Manisha Jadhav, Amol Patil, Vivekanand L Hembade, Auji Radhakrishna, Sanket J More and 6 more

Abstract read
In one paragraph

Article in Frontiers in plant science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Complete plastome data ofData in brief · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. The complete chloroplast genome ofFrontiers in plant science · 2026
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Yogesh P Khade *Indian Council of Agricultural Research (ICAR)-Directorate of Onion and Garlic Research, Pune, Maharashtra, India.
Pawan Mainkar *Indian Council of Agricultural Research (ICAR)-Directorate of Onion and Garlic Research, Pune, Maharashtra, India.
Aniket ChandanshiveMahatma Phule Krishi Vidyapeeth, Rahuri, Maharashtra, India.
Krishna Madhav RaiIndian Council of Agricultural Research (ICAR)-NBPGR Regional Station, Bhowali, Uttarakhand, India.
Shalaka R SinhasaneIndian Council of Agricultural Research (ICAR)-Directorate of Onion and Garlic Research, Pune, Maharashtra, India.
Manisha JadhavMahatma Phule Krishi Vidyapeeth, Rahuri, Maharashtra, India.
Amol PatilIndian Council of Agricultural Research (ICAR)-Directorate of Onion and Garlic Research, Pune, Maharashtra, India.
Vivekanand L HembadeIndian Council of Agricultural Research (ICAR)-Directorate of Onion and Garlic Research, Pune, Maharashtra, India.
Auji RadhakrishnaIndian Council of Agricultural Research (ICAR)-Directorate of Onion and Garlic Research, Pune, Maharashtra, India.
Sanket J MoreIndian Council of Agricultural Research (ICAR)-Directorate of Onion and Garlic Research, Pune, Maharashtra, India.
Anil Khar *Indian Council of Agricultural Research (ICAR)-IARI Regional Station, Pune, Maharashtra, India.
Hem Raj BhandariIndian Council of Agricultural Research (ICAR)-Directorate of Onion and Garlic Research, Pune, Maharashtra, India.
Amar Jeet GuptaIndian Council of Agricultural Research (ICAR)-Directorate of Onion and Garlic Research, Pune, Maharashtra, India.
Rajiv B KaleIndian Council of Agricultural Research (ICAR)-Directorate of Onion and Garlic Research, Pune, Maharashtra, India.
Krishna PrakashIndian Council of Agricultural Research (ICAR)-Indian Agriculture Research Institute, Hazaribagh, Jharkhand, India.
Vijay MahajanIndian Council of Agricultural Research (ICAR)-Directorate of Onion and Garlic Research, Pune, Maharashtra, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alliums, including vital crops such as onion, garlic, chives, bunching onion, and leek, are globally prized for their culinary applications and medicinal attributes. However, their genetic improvement remains constrained by large genome size, high heterozygosity, and limited characterization of genetic resources. To bridge this gap, we developed chloroplast simple sequence repeat (cp-SSR) markers, which are particularly suitable for population genetics studies because of their maternal inheritance, low recombination rates, and high variability. Leveraging the chloroplast genome of

Indexed as

Allium fistulosumcp-SSRcross transferabilitypopulation structureunderutilized species

Identifiers

PMID41031300
PMCPMC12477137

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.