Evidence map›Paper›PMID 41031082›Full record

ArticleArXiv2024

Language Enhanced Model for Eye (LEME): An Open-Source Ophthalmology-Specific Large Language Model.

Aidan Gilson, Xuguang Ai, Qianqian Xie, Sahana Srinivasan, Krithi Pushpanathan, Maxwell B Singer, Jimin Huang, Hyunjae Kim, Erping Long, Peixing Wan and 7 more

Abstract readPreprint
In one paragraph

Article in ArXiv, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Aidan GilsonDepartment of Ophthalmology, Massachusetts Eye and Ear, Harvard Medical School, Boston, Massachusetts.
Xuguang AiDepartment of Biomedical Informatics and Data Science, Yale School of Medicine, Yale University, New Haven, USA.
Qianqian XieDepartment of Biomedical Informatics and Data Science, Yale School of Medicine, Yale University, New Haven, USA.
Sahana SrinivasanSingapore Eye Research Institute, Singapore National Eye Centre, Singapore.
Krithi PushpanathanCentre for Innovation and Precision Eye Health, Department of Ophthalmology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore.
Maxwell B SingerDepartment of Ophthalmology and Visual Science, Yale School of Medicine, Yale University, New Haven, USA.
Jimin HuangDepartment of Biomedical Informatics and Data Science, Yale School of Medicine, Yale University, New Haven, USA.
Hyunjae KimDepartment of Computer Science, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul, 02841, Republic of Korea.
Erping LongDivision of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
Peixing WanCenter for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
Luciano V Del PrioreDepartment of Ophthalmology and Visual Science, Yale School of Medicine, Yale University, New Haven, USA.
Lucila Ohno-MachadoDepartment of Biomedical Informatics and Data Science, Yale School of Medicine, Yale University, New Haven, USA.
Hua XuDepartment of Biomedical Informatics and Data Science, Yale School of Medicine, Yale University, New Haven, USA.
Dianbo LiuCentre for Innovation and Precision Eye Health, Department of Ophthalmology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore.
Ron A AdelmanDepartment of Ophthalmology and Visual Science, Yale School of Medicine, Yale University, New Haven, USA.
Yih-Chung ThamSingapore Eye Research Institute, Singapore National Eye Centre, Singapore.
Qingyu ChenDepartment of Biomedical Informatics and Data Science, Yale School of Medicine, Yale University, New Haven, USA.

Funding

Natural language processing and medical imaging analysis for multi-modality computer assisted diagnosis of ophthalmic diseasesK99LM014024 · NLM · YALE UNIVERSITY · PI CHEN, QINGYU · 2023 to 2023
$92k
NLM NIH HHS K99 LM014024
6 · The paper itself

Abstract

Large Language Models (LLMs) are poised to revolutionize healthcare. Ophthalmology-specific LLMs remain scarce and underexplored. We introduced an open-source, specialized LLM for ophthalmology, termed Language Enhanced Model for Eye (LEME). LEME was initially pre-trained on the Llama2 70B framework and further fine-tuned with a corpus of ~127,000 non-copyrighted training instances curated from ophthalmology-specific case reports, abstracts, and open-source study materials. We benchmarked LEME against eight other LLMs, namely, GPT-3.5, GPT-4, three Llama2 models (7B, 13B, 70B), PMC-LLAMA 13B, Meditron 70B, and EYE-Llama (another ophthalmology-specific LLM). Evaluations included four internal validation tasks: abstract completion, fill-in-the-blank, multiple-choice questions (MCQ), and short-answer QA. External validation tasks encompassed long-form QA, MCQ, patient EHR summarization, and clinical QA. Evaluation metrics included Rouge-L scores, accuracy, and expert evaluation of correctness, completeness, and readability. In internal validations, LEME consistently outperformed its counterparts, achieving Rouge-L scores of 0.20 ± 0.03 in abstract completion (all p<0.05), 0.82 ± 0.04 in fill-in-the-blank (all p<0.0001), and 0.22 ± 0.05 in short-answer QA (all p<0.0001, except versus GPT-4). In external validations, LEME excelled in long-form QA with a Rouge-L of 0.19 ± 0.01 (all p<0.0001), ranked second in MCQ accuracy (0.68 ± 0.09; all p<0.0001), and scored highest in EHR summarization and clinical QA (ranging from 4.24 to 4.83 out of 5 for correctness, completeness, and readability). LEME's emphasis on robust fine-tuning and the use of non-copyrighted data represents a breakthrough in open-source ophthalmology-specific LLMs, offering the potential to revolutionize execution of clinical tasks while democratizing research collaboration.

Identifiers

PMID41031082
PMCPMC12478424

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.