Evidence map›Paper›PMID 41029204›Full record

ArticleBMC bioinformatics2025

Boosting K-nearest neighbor regression performance for longitudinal data through a novel learning approach.

Mohammad Sadegh Loeloe, Seyyed Mohammad Tabatabaei, Reyhane Sefidkar, Amir Houshang Mehrparvar, Sara Jambarsang

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Article in BMC bioinformatics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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2citing papers in PubMed
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3 · Its place in the literature

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2 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

5 authors.

Mohammad Sadegh LoeloeCenter for Healthcare Data Modeling, Department of Biostatistics and Epidemiology, School of Public Health, Shahid Sadoughi University of Medical Sciences, Yazd, Iran.
Seyyed Mohammad TabatabaeiDepartment of Medical Informatics, Faculty of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran.
Reyhane SefidkarCenter for Healthcare Data Modeling, Department of Biostatistics and Epidemiology, School of Public Health, Shahid Sadoughi University of Medical Sciences, Yazd, Iran.
Amir Houshang MehrparvarIndustrial Diseases Research Center, Occupational Medicine Department, Shahid Sadoughi University of Medical Sciences, Yazd, Iran.
Sara JambarsangCenter for Healthcare Data Modeling, Department of Biostatistics and Epidemiology, School of Public Health, Shahid Sadoughi University of Medical Sciences, Yazd, Iran. S.Jambarsang@gmail.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLongitudinal studies often require flexible methodologies for predicting response trajectories based on time-dependent and time-independent covariates. To address the complexities of longitudinal data, this study proposes a novel extension of K-Nearest Neighbor (KNN) regression, referred to as Clustering-based KNN Regression for Longitudinal Data (CKNNRLD).

methodsIn CKNNRLD, data are first clustered using the KML algorithm (K-means for longitudinal data), and the nearest neighbors are then searched within the relevant cluster rather than across the entire dataset. The theoretical framework of CKNNRLD was developed and evaluated through extensive simulation studies. Ultimately, the method was applied to a real longitudinal spirometry dataset.

resultCompared to the standard KNN, CKNNRLD demonstrated improved prediction accuracy, shorter execution time, and reduced computational burden. According to the simulation findings, using the CKNNRLD method for this purpose took less time compared to using the KNN implementation (for N > 100). It predicted the longitudinal responses more accurately and precisely than the equivalent algorithm. For instance, CKNNRLD execution time was approximately 3.7 times faster than the typical KNN execution time in the scenario with N = 2000, T = 5, D = 2, C = 4, E = 1, and R = 1. Since the KNN method needs all of the training data to identify the nearest neighbors, it tends to operate slowly as the number of individuals in longitudinal research increases (for N > 500).

conclusionThe CKNNRLD algorithm significantly improves accuracy and computational efficiency for predicting longitudinal responses compared to traditional KNN methods. These findings highlight its potential as a valuable tool for researchers with large longitudinal datasets.

Indexed as

AlgorithmsComputational BiologyCluster AnalysisHumansLongitudinal StudiesRegression AnalysisSpirometryK-means clusteringK-nearest neighborsLongitudinal studiesMachine learningProcessing speed

Identifiers

PMID41029204
PMCPMC12482645

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.