Evidence map›Paper›PMID 41028718›Full record

ArticleNature communications2025

A histone-centric multi-omics study shows that increased H3K4 methylation sustains triple-negative breast cancer phenotypes.

Roberta Noberini, Giulia Robusti, Alessandro Vai, Evelyn Oliva Savoia, Maria Giovanna Jodice, Giovanni Bertalot, Betül Çat, Isabella Pallavicini, Giuseppina Bonizzi, Maria Capra and 7 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. ERFrontiers in oncology · 2026
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Roberta Noberini *Department of Experimental Oncology, IEO European Institute of Oncology IRCSS, Milan, Italy. roberta.noberini@ieo.it.ORCID http://orcid.org/0000-0002-7267-1079
Giulia Robusti *Department of Experimental Oncology, IEO European Institute of Oncology IRCSS, Milan, Italy.ORCID http://orcid.org/0000-0002-9444-7369
Alessandro Vai *Department of Experimental Oncology, IEO European Institute of Oncology IRCSS, Milan, Italy.
Evelyn Oliva SavoiaDepartment of Experimental Oncology, IEO European Institute of Oncology IRCSS, Milan, Italy.ORCID http://orcid.org/0000-0003-3357-9920
Maria Giovanna JodiceDepartment of Experimental Oncology, IEO European Institute of Oncology IRCSS, Milan, Italy.
Giovanni BertalotDepartment of Experimental Oncology, IEO European Institute of Oncology IRCSS, Milan, Italy.ORCID http://orcid.org/0000-0002-4862-7705
Betül ÇatDepartment of Experimental Oncology, IEO European Institute of Oncology IRCSS, Milan, Italy.ORCID http://orcid.org/0009-0003-3431-3398
Isabella PallaviciniDepartment of Experimental Oncology, IEO European Institute of Oncology IRCSS, Milan, Italy.
Giuseppina BonizziBiobank for Translational and Digital Medicine, IEO European Institute of Oncology IRCCS, Milan, Italy.
Maria CapraBiobank for Translational and Digital Medicine, IEO European Institute of Oncology IRCCS, Milan, Italy.
Claudia Anna SangalliClinical Trial Office, IEO European Institute of Oncology IRCSS, Milan, Italy.
Federico ZambelliDipartimento di Bioscienze, Università degli Studi di Milano, Milan, Italy.ORCID http://orcid.org/0000-0003-3487-4331
Nicola FuscoBiobank for Translational and Digital Medicine, IEO European Institute of Oncology IRCCS, Milan, Italy.
Salvatore PeceDepartment of Experimental Oncology, IEO European Institute of Oncology IRCSS, Milan, Italy.
Giulio PavesiDipartimento di Bioscienze, Università degli Studi di Milano, Milan, Italy.
Saverio MinucciDepartment of Experimental Oncology, IEO European Institute of Oncology IRCSS, Milan, Italy.
Tiziana BonaldiDepartment of Experimental Oncology, IEO European Institute of Oncology IRCSS, Milan, Italy. tiziana.bonaldi@ieo.it.ORCID http://orcid.org/0000-0003-3556-1265

Funding

Associazione Italiana per la Ricerca sul Cancro (Italian Association for Cancer Research) IG-2023-28767Associazione Italiana per la Ricerca sul Cancro (Italian Association for Cancer Research) pre-doctoral fellowshipEC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) 823839Ministero della Salute (Ministry of Health, Italy) GR-2016-02361522
6 · The paper itself

Abstract

Altered histone post-translational modifications are frequently associated with cancer. Here, we apply mass-spectrometry to study the epigenetic landscapes of breast cancer subtypes, with a particular focus on triple-negative breast cancers (TNBCs), a heterogeneous group lacking well-defined molecular targets and effective therapies. The analysis of over 200 tumors reveals epigenetic signatures that discriminate TNBCs from the other BC subtypes, and that distinguish TNBC patients with different prognoses. Employing a multi-OMICs approach integrating epigenomics, transcriptomics, and proteomics data, we investigate the mechanistic role of increased H3K4 methylation in TNBCs, demonstrating that H3K4me2 sustains the expression of genes associated with the TNBC phenotype. Through CRISPR-mediated editing, we establish a causal relationship between H3K4me2 and gene expression for several targets. Furthermore, treatment with H3K4 methyltransferase inhibitors reduce TNBC cell growth in vitro and in vivo. Collectively, our results unravel a novel epigenetic pathway implicated in TNBC pathogenesis and suggest new opportunities for targeted therapy.

Indexed as

HistonesTriple Negative Breast NeoplasmsAnimalsCell Line, TumorCell ProliferationEpigenesis, GeneticEpigenomicsFemaleGene Expression Regulation, NeoplasticHistone-Lysine N-MethyltransferaseHumansMethylationMiceMultiomicsPhenotypeProtein Processing, Post-TranslationalHistone-Lysine N-MethyltransferaseHistones

Identifiers

PMID41028718
PMCPMC12484688

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.