Evidence map›Paper›PMID 41028382›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2026

TAIL-PCR for the Recovery of Tnt1 Flanking Sequences in Chickpea: A Tool for Functional Genomics Studies.

Chetan Chauhan, Shubhashish Ranjan, Vinod Kumar Jangid, Senjuti Sinharoy, Muthappa Senthil-Kumar, Divya Chandran

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Article in Methods in molecular biology (Clifton, N.J.), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Chetan ChauhanLaboratory of Plant-Microbe Interactions, Regional Centre for Biotechnology, NCR Biotech Science Cluster, 3rd Milestone, Faridabad-Gurugram Expressway, Faridabad, Haryana, India.ORCID https://orcid.org/0000-0003-0295-4011
Shubhashish RanjanNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India.ORCID https://orcid.org/0009-0008-8832-2050
Vinod Kumar JangidNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India.ORCID https://orcid.org/0000-0002-4794-1452
Senjuti SinharoyNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India.ORCID https://orcid.org/0000-0003-2323-2587
Muthappa Senthil-KumarNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India.ORCID https://orcid.org/0000-0003-1502-1659
Divya ChandranLaboratory of Plant-Microbe Interactions, Regional Centre for Biotechnology, NCR Biotech Science Cluster, 3rd Milestone, Faridabad-Gurugram Expressway, Faridabad, Haryana, India. divya.chandran@rcb.res.in.ORCID https://orcid.org/0000-0001-6206-8826

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thermal asymmetric interlaced polymerase chain reaction (TAIL-PCR) is a powerful technique for amplifying genomic regions flanking Tnt1-retortransposon insertions in plants. Here, we present a TAIL-PCR protocol for amplifying Tnt1-flanking genomic sequences in chickpea using Tnt1-transformed hairy roots as the starting material. The amplified products can be cloned and sequenced for the precise mapping of Tnt1-integration sites in the chickpea genome. This method enables the functional characterization of chickpea genes governing root-specific traits and can be easily adapted for flanking sequence tag recovery in chickpea Tnt1-mutant populations.

Indexed as

CicerDNA Transposable ElementsGenomicsPolymerase Chain ReactionDNA, PlantGenome, PlantMutagenesis, InsertionalPlant RootsDNA, PlantDNA Transposable ElementsCicer arietinumFlanking genomic sequencesHairy rootsTAIL-PCRTnt1-insertion

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.