Evidence map›Paper›PMID 41028366›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2026

Legume Pangenome Construction Using an Iterative Mapping and Assembly Approach.

Tessa R MacNish, Haifei Hu, Yuxuan Yuan, Philipp E Bayer, Cassandria G Tay Fernandez, Armin Scheben, Agnieszka A Golicz, David Edwards

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Tessa R MacNishSchool of Biological Sciences and Centre for Applied Bioinformatics, University of Western Australia, Perth, WA, Australia.
Haifei HuSchool of Biological Sciences and Centre for Applied Bioinformatics, University of Western Australia, Perth, WA, Australia.
Yuxuan YuanSchool of Biological Sciences and Centre for Applied Bioinformatics, University of Western Australia, Perth, WA, Australia.
Philipp E BayerMinderoo OceanOmics Centre at UWA, Oceans Institute, Perth, WA, Australia.
Cassandria G Tay FernandezSchool of Biological Sciences and Centre for Applied Bioinformatics, University of Western Australia, Perth, WA, Australia.
Armin SchebenSchool of Biological Sciences and Centre for Applied Bioinformatics, University of Western Australia, Perth, WA, Australia.
Agnieszka A GoliczDepartment of Agrobioinformatics, IFZ Research, Centre for Biosystems, Land Use and Nutrition, Justus Liebig University Giessen, Giessen, Germany.
David EdwardsSchool of Biological Sciences and Centre for Applied Bioinformatics, University of Western Australia, Perth, WA, Australia. dave.edwards@uwa.edu.au.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A pangenome is a collection of genomic sequences found in the entire species rather than a single individual. It allows comprehensive, species-wide characterization of genetic variations and mining of variable genes that may play important roles in phenotypes of interest. Advances in DNA sequencing technologies have facilitated genome sequence assembly and have made pangenome constructions routine. Here, we present a reference genome-based iterative mapping and assembly method to construct a pangenome for a legume species.

Indexed as

Chromosome MappingFabaceaeGenome, PlantGenomicsHigh-Throughput Nucleotide SequencingSequence Analysis, DNAAssemblyDe novoLegumeMappingPangenome

Identifiers

PMID41028366

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.