Evidence map›Paper›PMID 41027885›Full record

ArticleNature communications2025

RNA-mediated condensation of TFE3 oncofusions facilitates transcriptional hub formation to promote translocation renal cell carcinoma.

Lei Guo, Rongjie Zhao, Yi-Tsang Lee, Junhua Huang, James Wengler, Logan Rivera, Tingting Hong, Tianlu Wang, Kunjal Rathod, Ashley Suris and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Cancers · 2026
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Lei Guo *Institute of Biosciences and Technology, Texas A&M University, Houston, TX, USA. guoleijay@tamu.edu.ORCID http://orcid.org/0000-0002-3933-4011
Rongjie Zhao *Institute of Biosciences and Technology, Texas A&M University, Houston, TX, USA.
Yi-Tsang Lee *Institute of Biosciences and Technology, Texas A&M University, Houston, TX, USA.ORCID http://orcid.org/0000-0003-4515-0355
Junhua HuangInstitute of Biosciences and Technology, Texas A&M University, Houston, TX, USA.
James WenglerInstitute of Biosciences and Technology, Texas A&M University, Houston, TX, USA.ORCID http://orcid.org/0000-0002-9641-4560
Logan RiveraInstitute of Biosciences and Technology, Texas A&M University, Houston, TX, USA.ORCID http://orcid.org/0000-0003-4528-0790
Tingting HongInstitute of Biosciences and Technology, Texas A&M University, Houston, TX, USA.ORCID http://orcid.org/0000-0002-4871-6353
Tianlu WangInstitute of Biosciences and Technology, Texas A&M University, Houston, TX, USA.
Kunjal RathodInstitute of Biosciences and Technology, Texas A&M University, Houston, TX, USA.
Ashley SurisInstitute of Biosciences and Technology, Texas A&M University, Houston, TX, USA.
Yitian WuInstitute of Biosciences and Technology, Texas A&M University, Houston, TX, USA.
Xiaoli CaiInstitute of Biosciences and Technology, Texas A&M University, Houston, TX, USA.
Rui WangInstitute of Biosciences and Technology, Texas A&M University, Houston, TX, USA.
Yubin ZhouInstitute of Biosciences and Technology, Texas A&M University, Houston, TX, USA. yubinzhou@tamu.edu.ORCID http://orcid.org/0000-0001-7962-0517
Yun HuangInstitute of Biosciences and Technology, Texas A&M University, Houston, TX, USA. yun.huang@tamu.edu.ORCID http://orcid.org/0000-0001-5950-9168

Funding

Epigenetic regulation in cardiac developmentR35HL166557 · NHLBI · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI Yun Huang · 2023 to 2026
$3.8M
Mutual reinforcement between somatic mutations and transcription factors in clonal hematopoiesisR01DK132286 · NIDDK · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI Xiaodong Cheng, Yun Huang · 2023 to 2026
$1.7M
Mutational cooperativity in TET2-associated hematological malignancies.R01CA240258 · NCI · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI HUANG, YUN · 2021 to 2025
$1.7M
Engineering Smart Antibody-like Protein Scaffolds with precision switchesR01GM144986 · NIGMS · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI ZHOU, YUBIN · 2022 to 2025
$1.3M
Selective targeting of a Rho GTPase mutant for peripheral T cell lymphoma treatmentR21CA277257 · NCI · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI ZHOU, YUBIN · 2023 to 2024
$392k
Leukemia and Lymphoma Society (Leukemia & Lymphoma Society) LLS-TRP 6680-24NCI NIH HHS R01 CA240258NCI NIH HHS R21 CA277257NHLBI NIH HHS R35 HL166557NIDDK NIH HHS R01 DK132286NIGMS NIH HHS R01 GM144986U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R01CA240258U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R21CA277257U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) R35HL166557U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (National Institute of Diabetes & Digestive & Kidney Diseases) R01DK132286U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R01GM144986Welch Foundation BE-1913-20220331 to YZ
6 · The paper itself

Abstract

Transcription factor E3 (TFE3) oncofusions are frequently detected in the Microphthalmia transcription factor (MiT) family translocation renal cell carcinoma (tRCC), a rare pediatric renal cancer with limited treatment options. The mechanisms by which TFE3 oncofusions promote tRCC malignancy remain inadequately defined. Here, we demonstrate that the RNA-binding capability conferred by TFE3 fusion partners drives the formation of TFE3 condensates. This further enables TFE3 oncofusions to co-condensate with RNA polymerase II (RNAPII) and other RNA-binding proteins, such as paraspeckle component 1 (PSPC1), ultimately driving the formation of transcriptional hubs to promote pro-oncogenic transcription. Dissolution of oncofusion condensates through nanobody-based chemogenetic manipulation effectively curtails tRCC cell growth both in vitro and in vivo, suggesting the therapeutic potential for targeting oncofusion condensation in tRCC. Collectively, our study establishes the causal role of RNA and RNA-binding proteins in facilitating oncofusion condensation to promote renal cancer progression.

Indexed as

Basic Helix-Loop-Helix Leucine Zipper Transcription FactorsCarcinoma, Renal CellKidney NeoplasmsRNAAnimalsCell Line, TumorCell ProliferationGene Expression Regulation, NeoplasticHumansMiceOncogene Proteins, FusionRNA-Binding ProteinsRNA Polymerase IITranscription, GeneticTranslocation, GeneticBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsOncogene Proteins, FusionRNARNA-Binding ProteinsRNA Polymerase IITFE3 protein, human

Identifiers

PMID41027885
PMCPMC12484640

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.