Evidence map›Paper›PMID 41027866›Full record

ArticleNature communications2025

Amino acids bind to phase-separating proteins and modulate biomolecular condensate stability and dynamics.

Xufeng Xu, Merlijn H I van Haren, Iris B A Smokers, Brent S Visser, Paul B White, Robert S Jansen, Evan Spruijt

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xufeng XuInstitute for Molecules and Materials, Radboud University, Nijmegen, The Netherlands. xfengxu@hotmail.com.ORCID http://orcid.org/0000-0003-2806-1668
Merlijn H I van HarenInstitute for Molecules and Materials, Radboud University, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0003-2281-8834
Iris B A SmokersInstitute for Molecules and Materials, Radboud University, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0001-7938-1616
Brent S VisserInstitute for Molecules and Materials, Radboud University, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0003-0850-8426
Paul B WhiteInstitute for Molecules and Materials, Radboud University, Nijmegen, The Netherlands.
Robert S JansenDepartment of Microbiology, Radboud Institute for Biological and Environmental Sciences, Radboud University, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0001-9612-2798
Evan SpruijtInstitute for Molecules and Materials, Radboud University, Nijmegen, The Netherlands. evan.spruijt@ru.nl.ORCID http://orcid.org/0000-0003-4793-9923

Funding

Nederlandse Organisatie voor Wetenschappelijk Onderzoek (Netherlands Organisation for Scientific Research) VI.Vidi.193.089Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) P500PN_222304
6 · The paper itself

Abstract

Biomolecular condensates (BCs) are ubiquitous compartments that regulate key functions in cells. BCs are surrounded by a complex intracellular environment, of which amino acids (AAs) are prominent components. However, it is unclear how AAs interact with condensate components and influence the material properties of condensates. Here, we demonstrate that phase separation is suppressed with glycine by using model heterotypic condensates composed of nucleophosmin 1 and ribosomal ribonucleic acid. The condensate density decreases, and the dynamics within the condensate increase. We find that glycine weakly binds to amide groups in the protein backbone and aromatic groups in the side chains, weakening the backbone-backbone interactions between neutral and charged disordered proteins while strengthening the interactions between aromatic stickers. This leads to different modulations of the phase behaviour in condensates formed by π/cation-π interactions and charge complexation. We further show that a modulation effect on BCs is observed for other proteinogenic AAs and can be transferred to short homopeptides. These insights offer strategies to modulate the dynamic properties of BCs in vivo.

Indexed as

Amino AcidsBiomolecular CondensatesNuclear ProteinsGlycineHumansNucleophosminProtein BindingAmino AcidsGlycineNPM1 protein, humanNuclear ProteinsNucleophosmin

Identifiers

PMID41027866
PMCPMC12484591

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.