Evidence map›Paper›PMID 41026808›Full record

ArticleAmerican journal of respiratory and critical care medicine2026

Transmission of bedaquiline-resistant Mycobacterium tuberculosis in KwaZulu-Natal, South Africa.

Reeve Sobol, Shaheed V Omar, Tyler S Brown, Lavania Joseph, Keeren Lutchminarian, Linrui Tang, Yu Lan, Fay Willis, Angela Campbell, Joshua L Warren and 7 more

Abstract read
In one paragraph

Article in American journal of respiratory and critical care medicine, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. We Are Underprepared for Bedaquiline Resistance: A Call for Clinical and Programmatic Readiness.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2026
    Article
  2. Article
  3. A Case of Transmission of Bedaquiline- and Linezolid-Resistant Tuberculosis.International journal of molecular sciences · 2026
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Reeve SobolDepartment of Epidemiology, Mailman School of Public Health, Columbia University Irving Medical Center, New York, NY, United States.
Shaheed V OmarCentre for Tuberculosis, National and Supranational TB Reference Laboratory, National Health Laboratory Service, National Institute for Communicable Diseases, Johannesburg, South Africa.
Tyler S BrownSection of Infectious Diseases, Boston University Chobanian & Avedisian School of Medicine, Boston, MA, United States.
Lavania JosephCentre for Tuberculosis, National and Supranational TB Reference Laboratory, National Health Laboratory Service, National Institute for Communicable Diseases, Johannesburg, South Africa.
Keeren LutchminarianCentre for Enteric Diseases, National Health Laboratory Service, National Institute for Communicable Diseases, Johannesburg, South Africa.
Linrui TangDepartment of Epidemiology, Mailman School of Public Health, Columbia University Irving Medical Center, New York, NY, United States.ORCID 0000-0003-0144-0019
Yu LanDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States.
Fay WillisDepartment of Epidemiology, Emory University Rollins School of Public Health, Atlanta, GA, United States.
Angela CampbellDepartment of Epidemiology, Emory University Rollins School of Public Health, Atlanta, GA, United States.
Joshua L WarrenDepartment of Biostatistics, Yale School of Public Health, New Haven, CT, United States.
Ted CohenDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States.ORCID 0000-0002-8091-7198
James C M BrustDivision of General Internal Medicine and Division of Infectious Diseases, Montefiore Medical Center, Albert Einstein College of Medicine, New York, NY, United States.
Kogieleum NaidooCAPRISA-MRC HIV-TB Pathogenesis and Treatment Research Unit, Centre for the AIDS Programme of Research in South Africa, Durban, South Africa.ORCID 0000-0002-8874-6661
N Sarita ShahDepartment of Epidemiology, Emory University Rollins School of Public Health, Atlanta, GA, United States.
Neel R GandhiDepartment of Epidemiology, Emory University Rollins School of Public Health, Atlanta, GA, United States.ORCID 0000-0002-1665-299X
Barun MathemaDepartment of Epidemiology, Mailman School of Public Health, Columbia University Irving Medical Center, New York, NY, United States.ORCID 0000-0003-2772-479X
CONTEXT Study Team

Funding

Virology and Molecular Biomarkers CoreP30AI050409 · NIAID · EMORY UNIVERSITY · PI Ann M Chahroudi, Colleen F Kelley · 2002 to 2026
$74.0M
Patient and Population Health Outcomes Research SWGP30AI124414 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI Kathryn M. Anastos · 2017 to 2026
$28.3M
Core-010UL1TR001073 · NCATS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI KELLER, MARLA J, SHAMOON, HARRY · 2013 to 2017
$21.3M
Emory/Georgia TB Research Advancement Center (TRAC)P30AI168386 · NIAID · EMORY UNIVERSITY · PI Jeffrey M Collins · 2022 to 2026
$5.8M
The Role of Casual Contact and Migration in XDR TB Transmission in South Africa: a Geospatial, Genomic and Social Network StudyR01AI138646 · NIAID · EMORY UNIVERSITY · PI NAIDOO, KOGIELEUM, SHAH, NIPPIE SARITA · 2018 to 2022
$3.8M
Emergence of bedaquiline, pretomanid and linezolid resistance after implementation of new drug-resistant tuberculosis regimens in South AfricaR01AI169938 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Neel Rajnikant Gandhi, Barun Mathema · 2023 to 2026
$3.0M
Mentorship in Patient-Oriented Research in Tuberculosis, HIV and Global HealthK24AI114444 · NIAID · EMORY UNIVERSITY · PI GANDHI, NEEL RAJNIKANT · 2014 to 2023
$1.8M
Mentoring of multidisciplinary global health research in tuberculosis and HIVK24AI155045 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI BRUST, JAMES C M · 2020 to 2025
$889k
Geographic origins and dispersal of drug-resistant M. tuberculosis in South Africa: Advancing strategies for early detectionK08AI166125 · NIAID · UNIVERSITY OF COLORADO DENVER · PI BROWN, TYLER STEVEN · 2022 to 2025
$780k
Boston University -Chobanian & Avedisian School of Medicine Department of Medicine Career InvestmentEinstein/Montefiore Institute for Clinical and Translational Research UL1TR001073Einstein-Rockefeller-CUNY Center for AIDS Research P30AI124414Emory/Georgia Tuberculosis Research Advancement Center P30AI168386Emory University Center for AIDS Research P30AI050409National Institute of Allergy and Infectious DiseasesNCATS NIH HHS UL1 TR001073NIAID NIH HHS K08 AI166125NIAID NIH HHS K24 AI114444NIAID NIH HHS K24 AI155045NIAID NIH HHS P30 AI050409NIAID NIH HHS P30 AI124414NIAID NIH HHS P30 AI168386NIAID NIH HHS R01 AI138646NIAID NIH HHS R01 AI169938NIH HHS K08AI166125NIH HHS K24AI114444NIH HHS K24AI155045NIH HHS R01AI138646NIH HHS R01AI169938
6 · The paper itself

Abstract

rationaleBedaquiline is a critical component of new drug-resistant tuberculosis (TB) treatment regimens. Emergence of bedaquiline-resistant Mycobacterium tuberculosis (Mtb) threatens to undermine already limited treatment options. Understanding the evolution and transmission of bedaquiline-resistant strains is a high priority for TB control.

objectivesWe evaluated the prevalence, strain genetic diversity, and transmission of bedaquiline resistance among people with drug-resistant TB.

methodsWe conducted a prospective study of all patients diagnosed with TB resistant to a fluoroquinolone or a second-line injectable drug in KwaZulu-Natal province, South Africa, between 2018 and 2022. We utilized whole genome sequencing (WGS), SNP-based clustering, and Bayesian reconstruction of transmission trees to examine the genomic characteristics and transmission networks of bedaquiline-resistant Mtb strains. MEASUREMENTS AND MAIN

resultsWe enrolled 843 of 1070 eligible individuals and obtained WGS for 632 participants. Of the sequenced isolates, 14% (n = 89) were genotypically bedaquiline-resistant, 67% (n = 60) of which were in clusters of recently transmitted infections. Resistance was present across all Mtb lineages and across strains with different resistance profiles to other TB drugs. We observed no differences in lineage distribution, bedaquiline resistance-associated mutations, or drug resistance profiles between clustered and nonclustered isolates. Transmission inference and geographic reconstruction of transmission networks indicate considerable unsampled cases within transmission networks.

conclusionsBedaquiline resistance was common in this cohort of individuals with highly drug-resistant TB. Most bedaquiline-resistant infections were attributable to recent transmission, involving Mtb strains with diverse genetic backgrounds and a variety of causative mutations. The diversity and transmissibility of bedaquiline-resistant Mtb signal a growing public health threat.

Indexed as

Antitubercular AgentsDiarylquinolinesMycobacterium tuberculosisTuberculosis, Multidrug-ResistantAdultFemaleHumansMaleMiddle AgedPrevalenceProspective StudiesSouth AfricaWhole Genome SequencingYoung AdultAntitubercular AgentsbedaquilineDiarylquinolinesbedaquiline resistancegenomic epidemiologytransmissiontuberculosis

Identifiers

PMID41026808
PMCPMC12637405

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.