Evidence map›Paper›PMID 41026105›Full record

ArticleThe Journal of infectious diseases2026

Blood Cultures Contain Populations of Genetically Diverse Candida albicans Strains that May Differ in Echinocandin Tolerance and Fitness.

Giuseppe Fleres, Shaoji Cheng, Hassan Badrane, Christopher L Dupont, Josh L Espinoza, Darren Abbey, Eileen Driscoll, Anthony Newbrough, Binghua Hao, Akila Mansour and 2 more

Abstract read
In one paragraph

Article in The Journal of infectious diseases, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Profound cell wall remodeling inMicrobiology spectrum · 2026
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Giuseppe FleresDepartment of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.ORCID 0000-0002-2332-8960
Shaoji ChengDepartment of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Hassan BadraneDepartment of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.ORCID 0009-0009-7412-0199
Christopher L DupontDepartments of Genomic Medicine, Human Health and Disease, and Human Microbiome, J. Craig Venter Institute, La Jolla, California, USA.
Josh L EspinozaDepartments of Genomic Medicine, Human Health and Disease, and Human Microbiome, J. Craig Venter Institute, La Jolla, California, USA.
Darren AbbeyDepartments of Bioinformatics, Cell Biology and Molecular Biology, University of Minnesota, Minneapolis, Minnesota, USA.
Eileen DriscollDepartment of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.ORCID 0000-0003-3673-4228
Anthony NewbroughDepartment of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.ORCID 0009-0008-6691-2295
Binghua HaoDepartment of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Akila MansourDepartment of Pathology, University of Pittsburgh Medical Center, Pittsburgh, Pennsylvania, USA.ORCID 0009-0002-0691-8819
M Hong NguyenDepartment of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.ORCID 0000-0003-2065-3239
Cornelius J ClancyDepartment of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.ORCID 0000-0003-1750-4005

Funding

Genomic diversity of Candida bloodstream infectionsR21AI160098 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI NGUYEN, M. HONG THI · 2021 to 2022
$499k
NIAID NIH HHS R21 AI160098NIH HHS R21 AI160098VA Merit Review 1IO1BX001955
6 · The paper itself

Abstract

backgroundIt is unknown whether within-patient Candida albicans diversity is common during bloodstream infections (BSIs).

methodsWe determined whole genome sequences of 10 C. albicans strains from blood cultures (BCs) in each of 4 patients. We performed detailed phenotypic studies on strains from 1 patient.

resultsBCs in 3 patients contained mixed populations of strains that differed by large-scale genetic variants, including chromosome (Chr) 5 or 7 aneuploidy and Chr1 loss of heterozygosity (n = 1 each). In patient M, Chr7 trisomy (Tri7) strains were attenuated for hyphal and biofilm formation in vitro, due at least in part to NRG1 over-expression. Nevertheless, representative Tri7 strain M1 underwent filamentation during disseminated candidiasis (DC) in mice. M1 was more fit than euploid strain M2 during DC and mouse gastrointestinal colonization, and in blood ex vivo. M1 and M2 exhibited identical echinocandin minimum inhibitory concentrations, but M2 was more tolerant to micafungin in vitro. Furthermore, M2 was more competitive with M1 in mouse kidneys following micafungin treatment than it was in absence of micafungin. Tri7 strains represented 74% of patient M's baseline BC population, but euploid strains were 98% of the population after 3d of echinocandin treatment. Findings suggest that echinocandin tolerant, euploid strains were a subpopulation to more fit Tri7 strains at baseline and then were selected upon echinocandin exposure.

conclusionsBCs in some patients are comprised of diverse C. albicans populations not recognized by the clinical lab, rather than single strains. Clinical relevance of C. albicans diversity and echinocandin tolerance merits further investigation.

Indexed as

Antifungal AgentsCandida albicansCandidemiaEchinocandinsGenetic VariationAnimalsBiofilmsBlood CultureCandidiasisDrug Resistance, FungalFemaleHumansMaleMicafunginMiceMicrobial Sensitivity TestsAntifungal AgentsEchinocandinsMicafunginbloodstream infectionsCandida albicanschromosome 7 trisomyechinocandin tolerancegenetic diversity

Identifiers

PMID41026105
PMCPMC13017712

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.