ArticleMicrobiology resource announcements2025
DiazoTIME: a metabolically-resolved reference database of nitrogen-fixing microbial genomes.
Julian Damashek, Cody S Sheik, Caitlin Petro, Christian F Reeder, Subhadeep Chowdhury, Benjamin J Kramer, Stephen E DeVilbiss, Juan J Pierella Karlusich, Jane C Marks, Patricia M Valdespino-Castillo and 5 more
Abstract read
In one paragraphArticle in Microbiology resource announcements, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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4 · The recordCorrections and comments
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5 · Who and what moneyAuthors and funding
15 authors.
Caitlin PetroCenter for Microbial Dynamics and Infection, School of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia, USA.ORCID 0000-0002-7946-9519 Christian F ReederDepartment of Biology and Environmental Science, Center for Ecology and Evolution in Microbial Model Systems - EEMIS, Linnæus University, Kalmar, Sweden.
Subhadeep ChowdhuryDepartment of Earth and Environment, Boston University, Boston, Massachusetts, USA.ORCID 0000-0002-3508-9805 Benjamin J KramerLarge Lakes Observatory, University of Minnesota Duluth, Duluth, Minnesota, USA.
Stephen E DeVilbissUnited States Department of Agriculture - Agricultural Research Service, United States Department of Agriculture - Agricultural Research Service, National Sedimentation Laboratory, Oxford, Mississippi, USA.
Juan J Pierella KarlusichDepartment of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.
Jane C MarksDepartment of Biological Sciences, Northern Arizona University, Flagstaff, Arizona, USA.
Patricia M Valdespino-CastilloEscuela Nacional de Ciencias de la Tierra, Universidad Nacional Autónoma de México, México City, México.
Paula C FureyDepartment of Biology, St. Catherine University, Saint Paul, Minnesota, USA.
Megan E BerberichDepartment of Biological Sciences, Michigan Technological University, Houghton, Michigan, USA.ORCID 0000-0001-5363-892X Amy M MarcarelliDepartment of Biological Sciences, Michigan Technological University, Houghton, Michigan, USA.ORCID 0000-0002-4175-9211 J Thad ScottDepartment of Biology, Baylor University, Waco, Texas, USA.
Robinson W FulweilerDepartment of Earth and Environment, Boston University, Boston, Massachusetts, USA.ORCID 0000-0003-0871-4246 Funding
HORIZON EUROPE Marie Sklodowska-Curie Actions 101150634National Science Foundation 1754756National Science Foundation 2015825
6 · The paper itselfAbstract
Microbial nitrogen fixation (diazotrophy) is a critical ecological process. We curated DiazoTIME (Diazotroph Taxonomic Identity and MEtabolism), a comprehensive database of diazotroph genomes including taxonomic annotation and metabolic prediction. DiazoTIME is unique among databases for classifying diazotrophs because it resolves both taxonomy and metabolic functionality.
Indexed as
biogeochemistrydiazotrophsgenomicsmetabolismmicrobial ecologynitrogen cycle enzymesnitrogen fixation
Identifiers
PMID41025798
PMCPMC12613961
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