Evidence map›Paper›PMID 41025501›Full record

ArticleNeuro-oncology2026

YBX1&YBX3 as novel targets to potentiate immune checkpoint blockade response in gliomas.

Heba Ali, Ningjia Zhou, Li Chen, Levi van Hijfte, Rima Tulaiha, Vivekanudeep Karri, Yalu Zhou, Karl Habashy, Victor A Arrieta, Kwang-Soo Kim and 12 more

Abstract read
In one paragraph

Article in Neuro-oncology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors.

Heba AliDepartment of Neurological Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States.ORCID 0000-0001-5535-7638
Ningjia ZhouDepartment of Neurological Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States.
Li ChenDepartment of Neurological Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States.
Levi van HijfteMicroenvironment and Immunology Research Laboratory, Friedrich-Alexander Universität Nürnberg-Erlangen, Erlangen, Germany.
Rima TulaihaSimpson Querrey Institute for Epigenetics and the Department of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, IL, United States (R.T., L.W.).
Vivekanudeep KarriDepartment of Neurological Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States.
Yalu ZhouDivision of Nephrology and Hypertension, Northwestern University Feinberg School of Medicine and the Feinberg Cardiovascular and Renal Research Institute, Chicago, IL, United States.
Karl HabashyDepartment of Neurological Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States.
Victor A ArrietaDepartment of Neurological Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States.
Kwang-Soo KimDepartment of Neurological Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States.
Joseph DuffyDepartment of Neurological Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States.
Ragini YeeravalliDepartment of Neurological Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States.
Deanna M TiekThe Ken and Ruth Dave Department of Neurology, Lou and Jean Malnati Brain Tumor Institute, and Robert H. Lurie Comprehensive Cancer Center, Northwestern University Feinberg School of Medicine, Chicago, IL, United States.ORCID 0000-0002-2881-7691
Xiao SongThe Ken and Ruth Dave Department of Neurology, Lou and Jean Malnati Brain Tumor Institute, and Robert H. Lurie Comprehensive Cancer Center, Northwestern University Feinberg School of Medicine, Chicago, IL, United States.
Snehasis MishraDepartment of Neurological Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States.
Craig HorbinskiDepartment of Neurological Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States.
Catalina Lee-ChangDepartment of Neurological Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States.
Atique AhmedDepartment of Neurological Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States.ORCID 0000-0003-4795-0188
Lu WangSimpson Querrey Institute for Epigenetics and the Department of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, IL, United States (R.T., L.W.).
Dieter Henrik HeilandMicroenvironment and Immunology Research Laboratory, Friedrich-Alexander Universität Nürnberg-Erlangen, Erlangen, Germany.
Adam M SonabendDepartment of Neurological Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States.
Crismita DmelloDepartment of Neurological Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States.ORCID 0000-0002-1688-9663

Funding

STINGing GBM: A First-in- Man Clinical Trial in Surgical Resectable Recurrent GBMP50CA221747 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Hui Zhang · 2018 to 2026
$21.4M
Cellular Plasticity and equilibrium in GBM ProgressionR01NS096376 · NINDS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Atique U. Ahmed · 2017 to 2026
$3.9M
Blood-brain barrier disruption with implantable ultrasound to enhance paclitaxel delivery: A Phase 1-2 clinical trial in recurrent glioblastomaR01CA245969 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Adam M Sonabend, Roger Stupp · 2020 to 2026
$2.8M
TOP2A effects on transcription in gliomas: implications for personalized therapyDP5OD021356 · OD · NORTHWESTERN UNIVERSITY AT CHICAGO · PI SONABEND, ADAM M · 2015 to 2019
$2.0M
The Immunosuppressive Function of Checkpoint Kinase 2 in GliomasR01NS138769 · NINDS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Crismita Clement Dmello · 2024 to 2026
$1.2M
NCI NIH HHS P50 CA221747NCI NIH HHS R01 CA245969NIH HHS DP5 OD021356NINDS NIH HHS R01 NS096376NINDS NIH HHS R01 NS138769SPORE for Translational Approaches to Brain Cancer 1R01CA245969SPORE for Translational Approaches to Brain Cancer 5DP5OD021356SPORE for Translational Approaches to Brain Cancer R01NS096376-06A1
6 · The paper itself

Abstract

backgroundGlioblastoma (GBM) exhibits profound resistance to CD8⁺ T cell-mediated killing, yet the tumor-intrinsic mechanisms driving this immune evasion remain poorly defined. Our earlier study revealed Checkpoint Kinase 2 (Chek2) as the driver of CD8+ T cell resistance. This study investigates the immunomodulatory program exerted by the CHK2-YBX1&YBX3 regulatory hub.

methodsProtein-protein interactions were investigated through immunoprecipitation (IP) followed by mass spectrometry (MS) and phosphoproteomics. Single gene knockout of CHEK2, Y-box-binding protein 1 (YBX1), and Y-box-binding protein 3 (YBX3) were generated in human and mouse glioma cells. Transcriptomic and epigenetic alterations were characterized by bulk RNA sequencing and chromatin immunoprecipitation sequencing (ChIP-seq). Single-cell RNA sequencing and spatial transcriptomics analysis were performed to evaluate CHK2-YBX1&YBX3 related phenotype in human GBM tumors. In vivo survival studies were conducted to assess the therapeutic potential of CHK2-YBX1&YBX3 degradation and immune checkpoint blockade (ICB).

resultsCHK2, YBX1, and YBX3 exhibited reciprocal positive regulation and depletion of any of these genes resulted in derepression of pro-inflammatory gene expression. Pharmacological inhibition with the drug targeting YBX1 led to degradation of the CHK2-YBX1&YBX3 hub accompanied by enhanced antigen presentation and antigen-specific CD8⁺ T cell proliferation. Combination therapy targeting CHK2-YBX1&YBX3 hub and ICB significantly improved survival in preclinical glioma models.

conclusionsThese findings define a novel glioma-intrinsic immunosuppressive program and proposes targeting the CHK2-YBX1&YBX3 hub to potentiate response to ICB in glioma.

Indexed as

Brain NeoplasmsGliomaImmune Checkpoint InhibitorsY-Box-Binding Protein 1AnimalsCheckpoint Kinase 2Gene Expression Regulation, NeoplasticHumansMiceTumor Cells, CulturedCheckpoint Kinase 2CHEK2 protein, humanImmune Checkpoint InhibitorsY-Box-Binding Protein 1YBX1 protein, humangliomaimmunotherapyYBX1&YBX3

Identifiers

PMID41025501
PMCPMC12930254

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.