Evidence map›Paper›PMID 41025474›Full record

ArticleJournal of the American Heart Association2025

Transcriptome Analysis Identified

Takaya Kitano, Tsutomu Sasaki, Takahiro Matsui, Masaharu Kohara, Kotaro Ogawa, Kenichi Todo, Hajime Nakamura, Yuri Sugiura, Yuki Shimada, Shuhei Okazaki and 8 more

Abstract read
In one paragraph

Article in Journal of the American Heart Association, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Takaya KitanoDepartment of Neurology Toyonaka Municipal Hospital Osaka Japan.ORCID 0000-0003-1903-8255
Tsutomu SasakiDepartment of Neurology The University of Osaka Graduate School of Medicine Osaka Japan.ORCID 0000-0001-8726-978X
Takahiro MatsuiDepartment of Immunology and Cell Biology The University of Osaka Graduate School of Medicine Osaka Japan.ORCID 0000-0002-6753-1688
Masaharu KoharaDepartment of Pathology The University of Osaka Graduate School of Medicine Osaka Japan.ORCID 0009-0006-7636-5833
Kotaro OgawaDepartment of Neurology The University of Osaka Graduate School of Medicine Osaka Japan.ORCID 0000-0002-2566-7675
Kenichi TodoDepartment of Neurology The University of Osaka Graduate School of Medicine Osaka Japan.ORCID 0000-0001-7711-3466
Hajime NakamuraDepartment of Neurosurgery The University of Osaka Graduate School of Medicine Osaka Japan.
Yuri SugiuraDepartment of Neurology Toyonaka Municipal Hospital Osaka Japan.
Yuki ShimadaDepartment of Neurology Osaka General Medical Center Osaka Japan.
Shuhei OkazakiDepartment of Neurology The University of Osaka Graduate School of Medicine Osaka Japan.ORCID 0000-0002-5789-2893
Junichi IidaDepartment of Neurosurgery Osaka General Medical Center Osaka Japan.
Kohki ShimazuDepartment of Pathology Osaka General Medical Center Osaka Japan.
Eiichi MoriiDepartment of Pathology The University of Osaka Graduate School of Medicine Osaka Japan.ORCID 0000-0001-8490-3650
Manabu SakaguchiDepartment of Neurology Osaka General Medical Center Osaka Japan.ORCID 0000-0001-9046-4703
Masami NishioDepartment of Neurosurgery Toyonaka Municipal Hospital Osaka Japan.
Masaru YokoeDepartment of Neurology Toyonaka Municipal Hospital Osaka Japan.
Haruhiko KishimaDepartment of Neurosurgery The University of Osaka Graduate School of Medicine Osaka Japan.ORCID 0000-0002-9041-2337
Hideki MochizukiDepartment of Neurology The University of Osaka Graduate School of Medicine Osaka Japan.ORCID 0000-0002-0874-7542

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThrombi follow various natural courses. They are known to become harder over time and may persist long term; some of them can also undergo early spontaneous dissolution and disappearance. Hindering thrombus stability may contribute to the treatment of thrombosis and the prevention of embolisms. However, the detailed mechanisms underlying thrombus maturation remain unclear.

methodsWe compared the RNA expression in 3 thrombi retrieved from cerebral vessels via thrombectomy with that in simultaneously sampled blood. The results were validated using immunohistochemistry on 66 thrombi retrieved from patients with cerebral embolism. Single-cell RNA sequencing data of thrombi from pulmonary arteries were used to uncover the molecular mechanisms.

resultsA total of 1121 genes were upregulated in thrombi. Pathway enrichment and protein-protein interaction analyses revealed upregulation of extracellular matrix formation and identified

conclusionsCollectively, our findings indicate that

Indexed as

Extracellular MatrixIntracranial EmbolismMonocytesOsteopontinThrombosisTranscriptomeAgedFemaleGene Expression ProfilingHumansMaleMiddle AgedThrombectomyOsteopontinSPP1 protein, humanextracellular matrixosteopontinRNA sequencingstrokethrombosis

Identifiers

PMID41025474
PMCPMC12684505

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.