Evidence map›Paper›PMID 41025407›Full record

ArticleJournal of experimental botany2026

Structural and functional comparison of hemoglobin Glb2-1 of Lotus japonicus with Glb1-1 and leghemoglobins.

Rosa M Esquinas-Ariza, Irene Villar, Samuel Minguillón, Ángel Zamarreño, Carmen Pérez-Rontomé, Brandon J Reeder, Niels Sandal, Deng Yan, José M García-Mina, Deqiang Duanmu and 2 more

Abstract readComparative Study
In one paragraph

Article in Journal of experimental botany, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Rosa M Esquinas-ArizaDepartamento de Biología Vegetal, Estación Experimental de Aula Dei (EEAD), Consejo Superior de Investigaciones Científicas (CSIC), 50059 Zaragoza, Spain.
Irene VillarDepartamento de Biología Vegetal, Estación Experimental de Aula Dei (EEAD), Consejo Superior de Investigaciones Científicas (CSIC), 50059 Zaragoza, Spain.
Samuel MinguillónDepartamento de Biología Vegetal, Estación Experimental de Aula Dei (EEAD), Consejo Superior de Investigaciones Científicas (CSIC), 50059 Zaragoza, Spain.ORCID 0000-0002-9629-9080
Ángel ZamarreñoDepartamento de Biología Ambiental, Instituto Bioma, Universidad de Navarra, Pamplona 31008, Spain.
Carmen Pérez-RontoméDepartamento de Biología Vegetal, Estación Experimental de Aula Dei (EEAD), Consejo Superior de Investigaciones Científicas (CSIC), 50059 Zaragoza, Spain.
Brandon J ReederSchool of Life Sciences, Essex University, Colchester CO4 3SQ, UK.
Niels SandalDepartment of Molecular Biology and Genetics, Aarhus University, Aarhus C 8000, Denmark.
Deng YanNational Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.
José M García-MinaDepartamento de Biología Ambiental, Instituto Bioma, Universidad de Navarra, Pamplona 31008, Spain.
Deqiang DuanmuNational Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0000-0002-9365-362X
Marta Martínez-JúlvezDepartamento de Bioquímica y Biología Molecular y Celular, Facultad de Ciencias, Universidad de Zaragoza, 50009 Zaragoza, Spain.ORCID 0000-0001-9047-0046
Manuel BecanaDepartamento de Biología Vegetal, Estación Experimental de Aula Dei (EEAD), Consejo Superior de Investigaciones Científicas (CSIC), 50059 Zaragoza, Spain.ORCID 0000-0002-1083-0804

Funding

Agencia Estatal de Investigación A09_23RAgencia Estatal de Investigación E35_23RCSIC Open Access Publication Support InitiativeGobierno de Aragón-FEDERUnit of Information Resources for Research
6 · The paper itself

Abstract

The legume Lotus japonicus expresses nine hemoglobins, including leghemoglobins (Lbs), class 1 phytoglobin (Glb1-1), and an unusual phytoglobin (Glb2-1). Quantitative PCR, proteomics, and plant mutant analyses indicated that Glb2-1 is mainly present in nodules without replacing Lb function, but is also in roots and photosynthetic tissues. Comparison of hormonal profiles of the knock-out mutants glb1-1, glb2-1, and glb1-1/2-1 showed that Glb1-1 and Glb2-1 have distinct functions. The increase of salicylic acid in the leaves of glb1-1 revealed a role of Glb1-1 in the defense response, which was corroborated by accumulation of pipecolic acid, a metabolite involved in plant immunity. In contrast, the decrease of bioactive jasmonoyl-isoleucine in glb2-1 was consistent with a role of Glb2-1 in the plant's reproductive stage. The mutants also showed changes in cytokinins, gibberellins, and polyamines, but without clear distinctive patterns. The crystal structure of Glb2-1 was determined to 1.6 Å resolution and compared with those of soybean Lba and Arabidopsis Glb1. In combination with mutant versions of Glb2-1, residues Tyr31, His64, and Cys65 were identified as critical for O2-binding stability. Spectral changes in heme coordination when Tyr31 is substituted for Phe highlights the importance of the residue at the B10 position for Lb and Glb function.

Indexed as

HemoglobinsLeghemoglobinLotusPlant ProteinsHemoglobinsLeghemoglobinPlant ProteinsHeme coordinationlegume-rhizobium symbiosisLotus japonicusphytohormonespipecolic acidplant hemoglobinsprotein structure

Identifiers

PMID41025407
PMCPMC12794238

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.