Evidence map›Paper›PMID 41024198›Full record

ArticleEnvironmental microbiome2025

Decoding microbial diversity, biogeochemical functions, and interaction potentials in red sea hydrothermal vents.

Sharifah Altalhi, Júnia Schultz, Tahira Jamil, Isabel Diercks, Shradha Sharma, Jörg Follmann, Intikhab Alam, Karthik Raman, Nico Augustin, Froukje M van der Zwan and 1 more

Abstract read
In one paragraph

Article in Environmental microbiome, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Sharifah AltalhiBiological and Environmental Sciences and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Júnia SchultzBiological and Environmental Sciences and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Tahira JamilBiological and Environmental Sciences and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Isabel DiercksGEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany.
Shradha SharmaBhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras (IIT), Chennai, India.
Jörg FollmannPhysical Sciences and Engineering (PSE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Intikhab AlamCenter of Excellence for Smart Health, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.
Karthik RamanCentre for Integrative Biology and Systems Medicine (IBSE), Wadhwani School of Data Science and AI (WSAI), Indian Institute of Technology Madras (IIT), Chennai, India.
Nico AugustinGEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany.
Froukje M van der ZwanPhysical Sciences and Engineering (PSE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Alexandre Soares RosadoBiological and Environmental Sciences and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia. alexandre.rosado@kaust.edu.sa.

Funding

King Abdullah University of Science and Technology BAS/1/1096-01-0King Abdullah University of Science and Technology FCC/1/1973-43-01
6 · The paper itself

Abstract

backgroundHydrothermal vents along mid-ocean ridges host diverse microbial communities and are crucial to global elemental cycling. The Red Sea, known for its unique environmental conditions-including low nutrient levels, high year-round temperatures, bottom-water temperatures of 21 °C, and elevated salinity-hosts recently discovered active low-temperature hydrothermal vent fields at the axial Hatiba Mons volcano. These vents, characterized by large iron oxide mounds and abundant microbial mats, offer an extreme environment for studying the diversity and functions of prokaryotes involved in elemental cycling in this system. In this study, we used 16S rRNA sequencing and shotgun metagenomics to examine the microbial diversity and metabolic capabilities of precipitates and microbial mats from five vent sites.

resultsWe recovered 314 non-redundant metagenome-assembled genomes (MAGs), including 250 bacterial and 64 archaeal MAGs, representing 34 bacterial and 11 archaeal phyla. Functional annotations revealed diverse nutrient and metal cycling potentials, with notable enrichment in iron redox genes. Key players include Bathyarchaeia and Chloroflexi in the precipitates (contributing to carbon, nitrogen, sulfur, and metal cycling potentials) and Pseudomonadota members in the microbial mats and upper precipitates (involved in iron and sulfur metabolism and carbon fixation through the CBB cycle). Carbon fixation in precipitate potentials primarily occurs through the Wood-Ljungdahl pathway. Sulfur and nitrogen cycling genes are distributed across various genomes, indicating collaborative cycling.

conclusionOur genome-resolved analysis positions the Hatiba Mons vents as an iron-rich system that provides new insights into oligotrophic hydrothermal environments, with potential relevance for understanding novel metabolic pathways, extremophilic adaptations, and their roles in element cycling and biotechnological applications.

Indexed as

Biogeochemical cyclingCarbon fixationExtremophilesHatiba monsHydrothermal ventsIron metabolismMetagenome-assembled genomesMicrobial diversityRed seaShotgun metagenomics

Identifiers

PMID41024198
PMCPMC12482716

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.