Evidence map›Paper›PMID 41022891›Full record

ArticleScientific data2025

Chromosome-level genome assembly of the Chinese soft-shelled turtle Pelodiscus sinensis.

Jing Chen, Jiayun Yao, Xuemei Yuan, Lei Huang, Xianqi Peng, Xialian Bu, Jinbiao Jiao, Haiqi Zhang

Abstract readDataset
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jing ChenAgriculture Ministry Key Laboratory of Healthy Freshwater Aquaculture, Key Laboratory of Fish Health and Nutrition of Zhejiang Province, Key Laboratory of Fishery Environment and Aquatic Product Quality and Safety of Huzhou City, Zhejiang Institute of Freshwater Fisheries, Huzhou, 313001, China.ORCID 0000-0001-7395-716X
Jiayun YaoAgriculture Ministry Key Laboratory of Healthy Freshwater Aquaculture, Key Laboratory of Fish Health and Nutrition of Zhejiang Province, Key Laboratory of Fishery Environment and Aquatic Product Quality and Safety of Huzhou City, Zhejiang Institute of Freshwater Fisheries, Huzhou, 313001, China.
Xuemei YuanAgriculture Ministry Key Laboratory of Healthy Freshwater Aquaculture, Key Laboratory of Fish Health and Nutrition of Zhejiang Province, Key Laboratory of Fishery Environment and Aquatic Product Quality and Safety of Huzhou City, Zhejiang Institute of Freshwater Fisheries, Huzhou, 313001, China.
Lei HuangAgriculture Ministry Key Laboratory of Healthy Freshwater Aquaculture, Key Laboratory of Fish Health and Nutrition of Zhejiang Province, Key Laboratory of Fishery Environment and Aquatic Product Quality and Safety of Huzhou City, Zhejiang Institute of Freshwater Fisheries, Huzhou, 313001, China.
Xianqi PengAgriculture Ministry Key Laboratory of Healthy Freshwater Aquaculture, Key Laboratory of Fish Health and Nutrition of Zhejiang Province, Key Laboratory of Fishery Environment and Aquatic Product Quality and Safety of Huzhou City, Zhejiang Institute of Freshwater Fisheries, Huzhou, 313001, China.
Xialian BuAgriculture Ministry Key Laboratory of Healthy Freshwater Aquaculture, Key Laboratory of Fish Health and Nutrition of Zhejiang Province, Key Laboratory of Fishery Environment and Aquatic Product Quality and Safety of Huzhou City, Zhejiang Institute of Freshwater Fisheries, Huzhou, 313001, China.
Jinbiao JiaoAgriculture Ministry Key Laboratory of Healthy Freshwater Aquaculture, Key Laboratory of Fish Health and Nutrition of Zhejiang Province, Key Laboratory of Fishery Environment and Aquatic Product Quality and Safety of Huzhou City, Zhejiang Institute of Freshwater Fisheries, Huzhou, 313001, China.
Haiqi ZhangAgriculture Ministry Key Laboratory of Healthy Freshwater Aquaculture, Key Laboratory of Fish Health and Nutrition of Zhejiang Province, Key Laboratory of Fishery Environment and Aquatic Product Quality and Safety of Huzhou City, Zhejiang Institute of Freshwater Fisheries, Huzhou, 313001, China. zmk407@126.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Chinese soft-shelled turtle Pelodiscus sinensis is an economically important aquaculture species in Asia for its high nutritional and medicinal values. In recent years, with the continuous development of the P. sinensis breeding industry, the problems of germplasm resource degradation and population mixing have become increasingly prominent. In this study, a total of 471.77 Gb of sequencing data was generated, including 87.28 Gb (39.67×) of PacBio HiFi reads, 104.21 (47.36×) Gb of Illumina reads, 241.66 Gb (109.84×) of Hi-C data, and 38.62 Gb of RNA sequencing data. The final genome contained a length of 2.24 Gb with a contig N50 of 107.61 Mb and a scaffold N50 of 129.58 Mb. The final 2.14 Gb (95.42%) assembled genome sequences were anchored on 33 chromosomes, with a chromosome length that ranged from 13.04 Mb to 336.74 Mb. A total of 21,532 protein-coding genes were predicted and 21,149 genes were functionally annotated. The high-quality genome assembled in this study will represent a significant contribution to germplasm resources conservation of P. sinensis.

Indexed as

ChromosomesGenomeTurtlesAnimals

Identifiers

PMID41022891
PMCPMC12480638

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.