Evidence map›Paper›PMID 41017468›Full record

ArticleJournal of the American Chemical Society2025

Advancing Chemoenzymatic Synthesis and Covalent Immobilization of a Comprehensive Ganglio-glycosphingolipid Library Enables Functional Multiplex Bead Assays.

Arin Gucchait, Jingxin Fu, Libo Zhang, Anand Kumar Agrahari, Zimin Zheng, Xiaohong Yang, Hai Yu, Xiaoxiao Yang, Ajit Varki, Xi Chen

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Arin GucchaitDepartment of Chemistry, University of California, One Shields Avenue, Davis, California 95616, United States.
Jingxin FuDepartment of Chemistry, University of California, One Shields Avenue, Davis, California 95616, United States.ORCID 0000-0003-3042-849X
Libo ZhangDepartment of Chemistry, University of California, One Shields Avenue, Davis, California 95616, United States.
Anand Kumar AgrahariDepartment of Chemistry, University of California, One Shields Avenue, Davis, California 95616, United States.
Zimin ZhengDepartment of Chemistry, University of California, One Shields Avenue, Davis, California 95616, United States.
Xiaohong YangDepartment of Chemistry, University of California, One Shields Avenue, Davis, California 95616, United States.
Hai YuDepartment of Chemistry, University of California, One Shields Avenue, Davis, California 95616, United States.ORCID 0000-0002-4378-0532
Xiaoxiao YangDepartment of Chemistry, University of California, One Shields Avenue, Davis, California 95616, United States.
Ajit VarkiDepartments of Medicine and Cellular & Molecular Medicine, Glycobiology Research and Training Center, University of California, San Diego, California 92093, United States.
Xi ChenDepartment of Chemistry, University of California, One Shields Avenue, Davis, California 95616, United States.ORCID 0000-0002-3160-614X

Funding

BIOSYNTHESIS AND REGULATION OF SUBSTITUTED SIALIC ACIDSR01GM032373 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI VARKI, AJIT P · 1985 to 2022
$6.9M
Facile chemoenzymatic synthesis and purification of glycolipidsU01GM120419 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI CHEN, XI · 2016 to 2019
$2.8M
Developing chemoenzymatic strategies, enzymes, and kits for accessible and affordable gangliosidesR44GM139441 · NIGMS · INTEGRATED MICRO-CHROMATOGRAPHY SYSTEMS, INC. · PI LEE, LIM ANDREW · 2020 to 2022
$2.7M
Affordable sialoglycans and associated reagents for expanded chemoenzymatic productionR42GM143998 · NIGMS · INTEGRATED MICRO-CHROMATOGRAPHY SYSTEMS, INC. · PI LEE, LIM ANDREW · 2021 to 2024
$2.6M
Acquisition of a Q-Exactive Plus Mass SpectrometerS10OD025271 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI JEWELL, WILLIAM T · 2019 to 2019
$486k
NIGMS NIH HHS R01 GM032373NIGMS NIH HHS R42 GM143998NIGMS NIH HHS R44 GM139441NIGMS NIH HHS U01 GM120419NIH HHS S10 OD025271
6 · The paper itself

Abstract

Ganglio-series glycosphingolipids (ganglio-GSLs) are biologically important glycolipids comprising a glycan of a ganglio-series nature and a lipid called ceramide. The glycan component often contains one or more sialic acid residues. Accesses to structurally defined ganglio-GSLs remain limited due to their structural complexity and synthetic challenges, hindering both functional studies and therapeutic applications. To overcome the challenges, we report herein a scalable chemoenzymatic total synthesis strategy for the construction of the most comprehensive library of ganglio-GSLs to date. A chiral pool approach was developed for synthesizing simple glycosylsphingosines with desired sphingosine lengths (d18:1 or d20:1) from inexpensive d-xylose. Complex glycosylsphingosines were prepared using enzyme assembly synthetic map (EASyMap)-guided streamlined one-pot multienzyme (OPME) and stepwise OPME (StOPMe) glycosylation strategies facilitated by designing mutants with improved catalytic efficiencies for two key glycosyltransferases (CjCgtA and human ST6GALNAC5). Ganglio-GSLs containing a terminal primary amino group were then prepared by chemical acylation, enabling their covalent immobilization on magnetic beads to form a novel comprehensive ganglio-GSL-bead library encompassing 0-, a-, b-, and c-series ganglio-GSLs including structures containing up to five sialic acid residues with different (α2-3/6/8) sialyl linkages. Multiplex binding assays revealed that ganglio-GSLs exhibit distinctive interactions with glycan-binding proteins including plant lectins, antiganglioside antibodies, bacterial toxins, galectins, and human and mouse siglecs. The integration of streamlined chemoenzymatic total synthesis strategies, glycosyltransferase engineering, covalent immobilization of GSL analogs, and a multiplex assay platform enables synthesis and high-throughput studies of previously difficult-to-obtain ganglio-GSLs. It is broadly applicable to help advance glycobiology and develop GSL-based diagnostics and therapeutics.

Indexed as

GlycosphingolipidsGlycosyltransferasesGlycosylationHumansGlycosphingolipidsGlycosyltransferases

Identifiers

PMID41017468
PMCPMC12619687

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.