Evidence map›Paper›PMID 41016251›Full record

ReviewCurrent opinion in microbiology2025

The role of mobile genetic elements in adaptation of the microbiota to the dynamic human gut ecosystem.

Katherine Schubert, Teni Shosanya, Leonor García-Bayona

Abstract readReview
In one paragraph

Review in Current opinion in microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Genomic diversity and functional adaptation ofFrontiers in microbiology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Katherine SchubertDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.
Teni ShosanyaDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.
Leonor García-BayonaDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA. Electronic address: lgarciab@stanford.edu.

Funding

Plasmid encoded biofilm formation by the intestinal Bacteroidales and its importance in community ecology and resilienceR00AI167064 · NIAID · STANFORD UNIVERSITY · PI GARCIA-BAYONA, LEONOR · 2024 to 2025
$497k
NIAID NIH HHS R00 AI167064
6 · The paper itself

Abstract

The human intestinal microbiota is a dynamic ecosystem shaped by extensive horizontal gene transfer, particularly in individuals from industrialized populations. In this review, we discuss recent advances in our understanding of how mobile genetic elements (MGEs) contribute to microbial ecology and evolution in this diverse community, focusing on MGEs carrying fitness-conferring genes. Bacteroidales species can colonize individuals for decades and serve as major hubs for MGE exchange. Most MGEs are highly variable across individuals and geographies. Occasionally, conserved MGEs can spread across geography and lifestyles. Functional characterizations of MGEs reveal their roles in antibiotic resistance, interbacterial antagonism, biofilm formation, immune evasion, and nutrient acquisition, among others. Substantive progress in our understanding of MGEs in the gut microbiome offers promising avenues for therapeutic microbiome interventions. However, major challenges remain in functional prediction, host-MGE linkage, and experimental characterization.

Indexed as

BacteriaGastrointestinal MicrobiomeInterspersed Repetitive SequencesAdaptation, PhysiologicalEcosystemGene Transfer, HorizontalHumans

Identifiers

PMID41016251
PMCPMC12483282

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.