Evidence map›Paper›PMID 41014362›Full record

ReviewTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2025

Genetic basis and role of exotic accessions in cultivated cotton fiber quality improvement.

Ankush Sharma, Mingrui Xu, Deepak Vitrakoti, Jinesh D Patel, Peng W Chee, Andrew H Paterson

Abstract readReview
In one paragraph

Review in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ankush Sharma *Plant Genome Mapping Laboratory, University of Georgia, Athens, GA, 30602, USA.
Mingrui Xu *Plant Genome Mapping Laboratory, University of Georgia, Athens, GA, 30602, USA.
Deepak VitrakotiPlant Genome Mapping Laboratory, University of Georgia, Athens, GA, 30602, USA.
Jinesh D PatelDepartment of Crop, Soil and Environmental Sciences, Auburn University, Auburn, AL, 36849, USA.
Peng W CheeDepartment of Crop and Soil Sciences, The University of Georgia, Tifton, GA, USA.
Andrew H PatersonPlant Genome Mapping Laboratory, University of Georgia, Athens, GA, 30602, USA. patersonah@gmail.com.ORCID http://orcid.org/0000-0003-2159-0487

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageExotic Gossypium accessions still harbor QTL‑validated alleles that, combined with CRISPR pyramiding and genomic selection, can break the entrenched fiber length-strength trade‑off. Cotton's four independent domestications twice in diploids and twice in allotetraploids offer a natural experiment in fiber improvement. Synthesizing three decades of data, we chart how polyploidy, selection and modern breeding have repeatedly reshaped the Gossypium genome. More than 15,000 quantitative trait locus (QTL) and genome wide association mapping studies (GWAS) hits converge on a handful of chromosomal "hotspots"; new MAGIC, NAM, NIL and long-read resources now narrow these peaks to < 200 kb, resolving causal genes such as GhHOX3, GhZF14 and GhMYB7. Multi-omics evidence links auxin, ethylene, gibberellin, brassinosteroid and strigolactone signaling to HDZIP IV, MYB, bHLH/HLH and ERF networks that drive fiber initiation, extreme cell elongation and cellulose deposition. Population genomics shows that ~ 40% of favorable fiber alleles are fixed in elite Gossypium hirsutum, yet wild diploids and landraces still harbor variants that could break the length strength trade-off. We propose a three-step roadmap genomic selection, CRISPR gene pyramiding and accelerated introgression to expand cotton's genetic base and deliver fibers suited to sustainable textile demands.

Indexed as

Cotton FiberGossypiumPlant BreedingQuantitative Trait LociAllelesChromosome MappingGenome, PlantGenome-Wide Association StudyPhenotype

Identifiers

PMID41014362
PMCPMC12476451

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.