Evidence map›Paper›PMID 41013983›Full record

ArticleInternational journal of cancer2026

Linkage disequilibrium score regression identifies genetic correlations between hepatocellular carcinoma and clinically relevant traits.

Younghun Han, Vikram R Shaw, Jinyoung Byun, Aaron P Thrift, Catherine Zhu, Donghui Li, Rikita I Hatia, Robin Kate Kelley, Sean P Cleary, Anna S Lok and 28 more

Abstract read
In one paragraph

Article in International journal of cancer, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

38 authors.

Younghun HanInstitute for Clinical and Translational Research, Baylor College of Medicine, Houston, Texas, USA.
Vikram R ShawInstitute for Clinical and Translational Research, Baylor College of Medicine, Houston, Texas, USA.ORCID https://orcid.org/0000-0002-1172-5686
Jinyoung ByunInstitute for Clinical and Translational Research, Baylor College of Medicine, Houston, Texas, USA.ORCID https://orcid.org/0000-0001-8579-1435
Aaron P ThriftDepartment of Medicine, Baylor College of Medicine, Houston, Texas, USA.ORCID https://orcid.org/0000-0002-0084-5308
Catherine ZhuInstitute for Clinical and Translational Research, Baylor College of Medicine, Houston, Texas, USA.
Donghui LiDepartment of Gastrointestinal Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Rikita I HatiaDepartment of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Robin Kate KelleyHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California, USA.
Sean P ClearyDivision of Hepatobiliary & Pancreatic Surgery, University of Toronto, Toronto, Ontario, Canada.
Anna S LokDivision of Gastroenterology and Hepatology, Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan, USA.
Paige M BracciDepartment of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, California, USA.
Jennifer B PermuthDepartment of Gastrointestinal Oncology, Moffitt Cancer Center, Tampa, Florida, USA.ORCID https://orcid.org/0000-0002-4726-9264
Roxana BucurUniversity Health Network, Princess Margaret Cancer Center and Toronto General Hospital, Toronto, Ontario, Canada.
Jennifer KnoxUniversity Health Network, Princess Margaret Cancer Center and Toronto General Hospital, Toronto, Ontario, Canada.
Jian-Min YuanCancer Epidemiology and Prevention Program, UPMC Hillman Cancer Center, Department of Epidemiology, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.ORCID https://orcid.org/0000-0002-4620-3108
Amit G SingalDivision of Digestive and Liver Diseases, The University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Prasun K JalalDepartment of Gastroenterology and Hepatology, Baylor College of Medicine, Houston, Texas, USA.
R Mark GhobrialJ.C. Walter Jr. Transplant Center, Houston Methodist Hospital, Houston, Texas, USA.
Yuko KonoDivision of Gastroenterology & Hepatology, University of California San Diego, San Diego, California, USA.
Dimpy P ShahMays Cancer Center, The University of Texas Health Science Center San Antonio MD Anderson, San Antonio, Texas, USA.
Mindie H NguyenDivision of Gastroenterology and Hepatology, Department of Epidemiology and Population Health, Stanford University Medical Center, Palo Alto, California, USA.ORCID https://orcid.org/0000-0002-6275-4989
Neehar D ParikhDivision of Gastroenterology and Hepatology, Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan, USA.
Richard KimDepartment of Gastrointestinal Oncology, Moffitt Cancer Center, Tampa, Florida, USA.ORCID https://orcid.org/0000-0002-8448-844X
Hui-Chen WuDepartment of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York City, New York, USA.
Hashem El-SeragDepartment of Medicine, Baylor College of Medicine, Houston, Texas, USA.
Ping ChangDepartment of Medicine, Baylor College of Medicine, Houston, Texas, USA.
Yun Shin ChunDivision of Surgery, Department of Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Jian GuDepartment of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.ORCID https://orcid.org/0000-0003-3499-0973
Chad HuffDepartment of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Asif RashidDepartment of Pathology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Lu-Yu HwangDepartment of Epidemiology, Human Genetics, and Environment Science, The University of Texas Health Science Center at Houston, Houston, Texas, USA.
Alison P KleinDepartment of Oncology, Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins, Baltimore, Maryland, USA.
Saira A KhaderiDivision of Abdominal Transplantation, Baylor College of Medicine, Houston, Texas, USA.
Ahmed O KasebDepartment of Gastrointestinal Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.ORCID https://orcid.org/0000-0002-9491-0587
Kathrine A McGlynnDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, Maryland, USA.ORCID https://orcid.org/0000-0003-2329-9933
Lewis R RobertsDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota, USA.
Manal M HassanDepartment of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Christopher I AmosInstitute for Clinical and Translational Research, Baylor College of Medicine, Houston, Texas, USA.

Funding

Project 4: ImmunovirotherapyP50CA210964 · NCI · MAYO CLINIC ROCHESTER · PI Zongming Eric Chen · 2018 to 2026
$20.5M
Translational Research Support CoreP30ES030285 · NIEHS · BAYLOR COLLEGE OF MEDICINE · PI Cheryl L. Walker · 2019 to 2026
$14.7M
Prevention of Hepatocellular Carcinoma Related to Metabolic SyndromeP01CA263025 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Christopher I. Amos · 2022 to 2026
$8.9M
Genome-Wide Association Study (GWAS) in Hepatocellular Carcinoma (HCC)R01CA186566 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI AMOS, CHRISTOPHER I., HASSAN, MANAL METWALLY · 2015 to 2019
$3.6M
Developmental Reprogramming of Prostate Carcinogenesis by BPARC2ES018789 · NIEHS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI HO, SHUK-MEI, MANCINI, MICHAEL A. · 2009 to 2010
$1.9M
Genetic Epidemiology of Hepatocellular Carcinoma in African AmericansR01CA274528 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Aaron Peter Thrift · 2023 to 2026
$1.4M
Cancer Prevention and Research Institute of Texas RP200537NCI NIH HHS P01 CA263025NCI NIH HHS P50 CA210964NCI NIH HHS R01 CA186566NCI NIH HHS R01 CA274528NIEHS NIH HHS P30 ES030285NIEHS NIH HHS RC2 ES018789NIH HHS P01CA263025NIH HHS P30ES030285NIH HHS P50CA210964NIH HHS R01CA186566NIH HHS R01CA274528NIH HHS X01HG007490
6 · The paper itself

Abstract

Hepatocellular carcinoma (HCC) mortality is increasing globally, partly due to the growing prevalence of nonviral liver diseases. Genome-wide association studies (GWAS) have identified genetic variants associated with HCC development. Leveraging GWAS summary statistics and linkage disequilibrium score regression (LDSR), we investigated disease co-development with hepatitis C virus-negative (HCV-negative) HCC to provide unique insights into HCC etiology and prioritize relationships for further causal inquiry. We utilized the LDSR statistical framework to estimate the genetic correlation and heritability between HCV-negative HCC with 901 epidemiologic, behavioral, and clinical traits from the United Kingdom Biobank (UKBB). First, we set the threshold for observed scale heritability of each trait at 0.02 to ensure reliable inferences with adequate study power. Next, we observed significant positive genetic correlations between HCV-negative HCC and blood-based biomarkers of liver injury (ALT, GGT) and allostatic load (including glycated hemoglobin, blood pressure, and total albumin). We also identified a positive genetic correlation between HCV-negative HCC and diseases associated with metabolic dysfunction-associated steatotic liver disease (MASLD), including diabetes, hypertension, chronic ischemic heart disease, and others. Taken together, our results help to identify polygenic and pleiotropic signals related to different phenotypic traits associated with HCC and support further exploration of the predictive power of blood-based biomarkers identified in this study for inferring HCC development among HCV-negative individuals.

Indexed as

Carcinoma, HepatocellularLinkage DisequilibriumLiver NeoplasmsBiomarkers, TumorFemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansMaleMiddle AgedPolymorphism, Single NucleotideBiomarkers, Tumorgenetic correlationGWAShepatocellular carcinomaheritabilityUK Biobank

Identifiers

PMID41013983
PMCPMC12765977

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.