Evidence map›Paper›PMID 41012691›Full record

ArticleViruses2025

Rapid Visual Detection of Senecavirus A Based on RPA-CRISPR/Cas12a System with Canonical or Suboptimal PAM.

Xinrui Zhao, Genghong Jiang, Qinyi Ruan, Yunjie Qu, Xiaoyu Yang, Yongyan Shi, Dedong Wang, Jianwei Zhou, Jue Liu, Lei Hou

Abstract read
In one paragraph

Article in Viruses, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Xinrui ZhaoDepartment of Preventive Veterinary Medicine, College of Veterinary Medicine, Yangzhou University, No. 48 Wenhui Road, Hanjiang District, Yangzhou 225009, China.
Genghong JiangDepartment of Preventive Veterinary Medicine, College of Veterinary Medicine, Yangzhou University, No. 48 Wenhui Road, Hanjiang District, Yangzhou 225009, China.
Qinyi RuanDepartment of Preventive Veterinary Medicine, College of Veterinary Medicine, Yangzhou University, No. 48 Wenhui Road, Hanjiang District, Yangzhou 225009, China.
Yunjie QuDepartment of Preventive Veterinary Medicine, College of Veterinary Medicine, Yangzhou University, No. 48 Wenhui Road, Hanjiang District, Yangzhou 225009, China.
Xiaoyu YangDepartment of Preventive Veterinary Medicine, College of Veterinary Medicine, Yangzhou University, No. 48 Wenhui Road, Hanjiang District, Yangzhou 225009, China.
Yongyan ShiDepartment of Preventive Veterinary Medicine, College of Veterinary Medicine, Yangzhou University, No. 48 Wenhui Road, Hanjiang District, Yangzhou 225009, China.
Dedong WangDepartment of Preventive Veterinary Medicine, College of Veterinary Medicine, Yangzhou University, No. 48 Wenhui Road, Hanjiang District, Yangzhou 225009, China.
Jianwei ZhouDepartment of Preventive Veterinary Medicine, College of Veterinary Medicine, Yangzhou University, No. 48 Wenhui Road, Hanjiang District, Yangzhou 225009, China.
Jue LiuDepartment of Preventive Veterinary Medicine, College of Veterinary Medicine, Yangzhou University, No. 48 Wenhui Road, Hanjiang District, Yangzhou 225009, China.
Lei HouDepartment of Preventive Veterinary Medicine, College of Veterinary Medicine, Yangzhou University, No. 48 Wenhui Road, Hanjiang District, Yangzhou 225009, China.

Funding

Jue Liu Introduction Program of High-Level Innovation and Entrepreneurship Talents in Jiangsu ProvinceJue Liu Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD)Jue Liu the 111 Project D18007 (D18007)Lei Hou National Key Research and Development Program of China (2023YFD1800501)
6 · The paper itself

Abstract

Senecavirus A (SVA) is an emerging pathogen responsible for vesicular lesions and neonatal mortality in swine. In the absence of effective vaccines or therapeutics, early and accurate diagnosis is essential for controlling SVA outbreaks. Although nucleic acid-based detection methods are commonly employed, there remains a pressing need for rapid, convenient, highly sensitive, and specific diagnostic tools. Here, we developed a two-pot assay combining recombinase polymerase amplification (RPA) with CRISPR/Cas12a containing crRNA targeting canonical protospacer adjacent motifs (PAMs) for simple, rapid, and visual identification of SVA in clinical samples. Subsequently, we successfully streamlined this system into a one-pot assay by selecting a specially designed crRNA targeting suboptimal PAM and integrating RPA amplification reagents and CRISPR/Cas12a detection components into a single reaction system in one tube. The developed methods exhibited diagnostic specificity, showing no cross-reactivity with four major swine viruses, while showing remarkable sensitivity with a lower detection limit of just two copies. Clinical validation in field samples using these two methods revealed perfect agreement (100% concordance) with conventional quantitative PCR (qPCR) results (sample size,

Indexed as

CRISPR-Cas SystemsNucleic Acid Amplification TechniquesPicornaviridaePicornaviridae InfectionsSwine DiseasesAnimalsRecombinasesSensitivity and SpecificitySwineRecombinasesCRISPR/Cas12aone-pot assayrecombinant polymerase amplification (RPA)Senecavirus A (SVA)suboptimal PAM

Identifiers

PMID41012691
PMCPMC12474415

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.