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ArticleVaccines2025

Case Report: A Multi-Peptide Vaccine Targeting Individual Somatic Mutations Induces Tumor Infiltration of Neoantigen-Specific T Cells in a Patient with Metastatic Colorectal Cancer.

Armin Rabsteyn, Henning Zelba, Borong Shao, Lisa Oenning, Christina Kyzirakos, Simone Kayser, Tabea Riedlinger, Johannes Harter, Magdalena Feldhahn, Dirk Hadaschik and 4 more

Abstract readCase Reports
In one paragraph

Article in Vaccines, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Armin RabsteynZentrum für Humangenetik Tübingen, 72076 Tübingen, Germany.ORCID 0000-0002-0553-2693
Henning ZelbaZentrum für Humangenetik Tübingen, 72076 Tübingen, Germany.
Borong ShaoZentrum für Humangenetik Tübingen, 72076 Tübingen, Germany.
Lisa OenningZentrum für Humangenetik Tübingen, 72076 Tübingen, Germany.
Christina KyzirakosZentrum für Humangenetik Tübingen, 72076 Tübingen, Germany.
Simone KayserZentrum für Humangenetik Tübingen, 72076 Tübingen, Germany.
Tabea RiedlingerZentrum für Humangenetik Tübingen, 72076 Tübingen, Germany.
Johannes HarterCeGaT GmbH, 72076 Tübingen, Germany.
Magdalena FeldhahnCeGaT GmbH, 72076 Tübingen, Germany.
Dirk HadaschikCecava GmbH, 72076 Tübingen, Germany.ORCID 0000-0002-4739-6108
Florian BattkeCeGaT GmbH, 72076 Tübingen, Germany.ORCID 0000-0001-6021-5837
Veit SchebleMVZ für Diagnostik, Prävention, Onkologie und Gastroenterologie Tübingen GmbH, 72076 Tübingen, Germany.
Alfred KönigsrainerAllgemeine, Viszeral- und Transplantationschirurgie, Universitätsklinikum Tübingen, 72076 Tübingen, Germany.
Saskia BiskupZentrum für Humangenetik Tübingen, 72076 Tübingen, Germany.ORCID 0000-0002-1573-861X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND/

objectivesFully personalized peptide vaccines targeting tumor-specific mutations are a promising treatment option for patients in an adjuvant but also advanced/metastatic disease situation in addition to non-personalized standard therapies. Here, we report a patient's case with advanced metastatic colorectal cancer (mCRC) who was treated with a neoantigen-derived multi-peptide vaccine in addition to standard of care.

methodsTumor-specific mutations were identified by whole exome and transcriptome sequencing. An individualized peptide vaccine was designed using an in-house developed epitope prediction and vaccine design platform. In this case, the vaccine consisted of 20 peptides targeting 18 distinct mutations. The vaccine was administered according to a prime-boost scheme for a total of 12 vaccinations. Vaccine immunogenicity was determined by stimulation of patient T cells with vaccinated peptides and subsequent intracellular cytokine staining (ICS). Tumor-infiltrating lymphocytes (TIL) were analyzed by ICS and T cell receptor beta chain (TCRβ) sequencing.

resultsThe patient survived for 41 months since initial diagnosis despite continuous disease progression under all therapeutic interventions. The vaccination induced multiple neoantigen-specific T cell responses in the patient without notable side effects. Two liver metastases were resected five months after the start of vaccination, and TIL were extracted and cultured. Analysis of TIL cultures revealed tumor infiltration by vaccine-induced neoantigen-specific T cells in only one of the metastases. TCRβ sequencing of neoantigen-specific T cells and tumor tissues supported this finding. Vaccine-targeted variants were reduced or absent in the metastasis with vaccine-specific T cell infiltration.

conclusionsThis case demonstrates immunogenicity of a neoantigen-derived peptide vaccine and highlights tumor-infiltrating capabilities and potential cytotoxicity of vaccine-induced T cells in mCRC.

Indexed as

metastatic colorectal cancerneoantigenspersonalized peptide vaccinationTCRβ sequencingtumor-infiltrating lymphocytes

Identifiers

PMID41012163
PMCPMC12474295

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.