Evidence map›Paper›PMID 41011850›Full record

ArticlePathogens (Basel, Switzerland)2025

Genetic Diversity of Highly Pathogenic Avian Influenza Viruses Isolated in Hokkaido, Japan, During Winter 2024-2025.

Norikazu Isoda, Lim Yik Hew, Kazuki Nishikawa, Fumihito Takaya, Yo Shimazu, Daiki Kobayashi, Kei Nabeshima, Hisako Honjyo, Mana Esaki, Kosuke Okuya and 11 more

Abstract read
In one paragraph

Article in Pathogens (Basel, Switzerland), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Norikazu IsodaLaboratory of Microbiology, Department of Disease Control, Faculty of Veterinary Medicine, Hokkaido University, Sapporo 060-0818, Japan.ORCID 0000-0003-3480-988X
Lim Yik HewLaboratory of Microbiology, Department of Disease Control, Faculty of Veterinary Medicine, Hokkaido University, Sapporo 060-0818, Japan.ORCID 0009-0004-2766-084X
Kazuki NishikawaLaboratory of Microbiology, Department of Disease Control, Faculty of Veterinary Medicine, Hokkaido University, Sapporo 060-0818, Japan.
Fumihito TakayaBotanic Garden, Field Science Center for Northern Biosphere (FSC), Hokkaido University, Sapporo 060-0003, Japan.
Yo ShimazuLaboratory of Microbiology, Department of Disease Control, Faculty of Veterinary Medicine, Hokkaido University, Sapporo 060-0818, Japan.
Daiki KobayashiLaboratory of Microbiology, Department of Disease Control, Faculty of Veterinary Medicine, Hokkaido University, Sapporo 060-0818, Japan.ORCID 0009-0007-0072-1042
Kei NabeshimaEcological Risk Assessment and Control Section Center for Environmental Biology and Ecosystem, National Institute for Environmental Studies, Tsukuba 305-8506, Japan.
Hisako HonjyoEcological Risk Assessment and Control Section Center for Environmental Biology and Ecosystem, National Institute for Environmental Studies, Tsukuba 305-8506, Japan.
Mana EsakiJoint Graduate School of Veterinary Science, Kagoshima University, Kagoshima 899-4101, Japan.ORCID 0009-0001-3440-2687
Kosuke OkuyaJoint Graduate School of Veterinary Science, Kagoshima University, Kagoshima 899-4101, Japan.ORCID 0000-0002-7987-9884
Kosuke SodaAvian Zoonosis Research Center, Faculty of Agriculture, Tottori University, Tottori 680-0853, Japan.ORCID 0000-0001-9116-9001
Hiroshi ItoAvian Zoonosis Research Center, Faculty of Agriculture, Tottori University, Tottori 680-0853, Japan.
Asuka KumagaiEmerging Virus Group, Division of Zoonosis Research, National Institute of Animal Health, National Agriculture and Food Research Organization, Tsukuba 305-0856, Japan.
Hayate NishiuraEmerging Virus Group, Division of Zoonosis Research, National Institute of Animal Health, National Agriculture and Food Research Organization, Tsukuba 305-0856, Japan.
Takahiro HionoLaboratory of Microbiology, Department of Disease Control, Faculty of Veterinary Medicine, Hokkaido University, Sapporo 060-0818, Japan.
Hiroki TakakuwaFaculty of Life Sciences, Kyoto Sangyo University, Kyoto 603-8555, Japan.
Tatsufumi UsuiAvian Zoonosis Research Center, Faculty of Agriculture, Tottori University, Tottori 680-0853, Japan.ORCID 0000-0003-1726-1293
Makoto OzawaJoint Graduate School of Veterinary Science, Kagoshima University, Kagoshima 899-4101, Japan.ORCID 0000-0002-7731-5321
Yuko UchidaEmerging Virus Group, Division of Zoonosis Research, National Institute of Animal Health, National Agriculture and Food Research Organization, Tsukuba 305-0856, Japan.
Manabu OnumaEcological Risk Assessment and Control Section Center for Environmental Biology and Ecosystem, National Institute for Environmental Studies, Tsukuba 305-8506, Japan.ORCID 0000-0001-8611-7506
Yoshihiro SakodaLaboratory of Microbiology, Department of Disease Control, Faculty of Veterinary Medicine, Hokkaido University, Sapporo 060-0818, Japan.ORCID 0000-0001-7021-1688

Funding

Japan Science and Technology Agency SPRING JPMJSP2119the Environment Research and Technology Development Fund JPMEERF20254004the Japan Agency for Medical Research and Development (AMED) JP223fa627005the Japan Agency for Medical Research and Development (AMED) JP24wm000125008the World-Leading Innovative and Smart Education Program 1801
6 · The paper itself

Abstract

Genetic and antigenic analyses were performed on highly pathogenic avian influenza viruses (HPAIVs) isolated in Hokkaido, northern Japan, during the winter of 2024-2025. Ninety-eight HPAIVs were isolated from feces of waterfowl, tracheal swabs from dead wild birds, or lung homogenates from dead chickens. Phylogenetic analysis of the hemagglutinin (HA) gene from 47 representative isolates revealed that all sequences belonged to the G2d subgroup of clade 2.3.4.4b H5HA, which has been the dominant lineage in Hokkaido since the winter of 2021-2022. These isolates were further divided into three major groups within the subgroup. The HPAIVs isolated in the Republic of Korea, China, and North America were genetically closely related to the Hokkaido isolates, whereas no HPAIVs genetically related to European strains or those detected in North American cattle were identified. Furthermore, HPAIVs isolated from seabirds were genetically closely related to those found in dead marine mammals along the eastern coast of Hokkaido in the spring of 2025. No apparent antigenic differences were observed between the HPAIVs isolated in this study and those from previous seasons. These findings highlight the wide distribution of HPAIVs in Hokkaido, particularly from Asian and North American lineages, and underscore the importance of continuous surveillance.

Indexed as

Genetic VariationInfluenza A virusInfluenza in BirdsAnimalsBirdsChickensHemagglutinin Glycoproteins, Influenza VirusJapanPhylogenySeasonsHemagglutinin Glycoproteins, Influenza Virusclade 2.3.4.4bgenetic and antigenic analysishigh pathogenicity avian influenzaJapanwinter of 2024–2025

Identifiers

PMID41011850
PMCPMC12472925

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.