Evidence map›Paper›PMID 41011822›Full record

ArticlePathogens (Basel, Switzerland)2025

Genomic Analysis of Lumpy Skin Disease Virus from Western and Central Africa Suggests a Distinct Sub-Lineage Within the 1.2 LSDV Cluster.

John Fadele, Olusola Ogunsanya, Oluwatobi Adedokun, Akeemat Ayinla, Mbitkebeyo Pami, Ayotunde Sijuwola, Femi Saibu, Harouna Soumare, Urbain Fanou, Corrie Brown and 3 more

Abstract read
In one paragraph

Article in Pathogens (Basel, Switzerland), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

John FadeleInstitute of Genomics and Global Health, Redeemer's University, Ede 232102, Osun State, Nigeria.
Olusola OgunsanyaInstitute of Genomics and Global Health, Redeemer's University, Ede 232102, Osun State, Nigeria.ORCID 0000-0003-0475-0338
Oluwatobi AdedokunInstitute of Genomics and Global Health, Redeemer's University, Ede 232102, Osun State, Nigeria.
Akeemat AyinlaInstitute of Genomics and Global Health, Redeemer's University, Ede 232102, Osun State, Nigeria.
Mbitkebeyo PamiInstitute of Genomics and Global Health, Redeemer's University, Ede 232102, Osun State, Nigeria.
Ayotunde SijuwolaInstitute of Genomics and Global Health, Redeemer's University, Ede 232102, Osun State, Nigeria.
Femi SaibuInstitute of Genomics and Global Health, Redeemer's University, Ede 232102, Osun State, Nigeria.
Harouna SoumareInstitute of Genomics and Global Health, Redeemer's University, Ede 232102, Osun State, Nigeria.
Urbain FanouClinique Veterinaire Bon Pasteur, Fidjirosse, Cotonou 00229, Benin.
Corrie BrownLifeStock International, Athens, GA 30606, USA.ORCID 0000-0002-0332-6159
Bonto FaburayForeign Animal Disease Diagnostic Laboratory, U.S. Department of Agriculture, Animal and Plant Health Inspection Service, National Bio and Agro-Defense Facility, USDA, Manhattan, KS 66502, USA.ORCID 0009-0006-0421-7081
Christian HappiInstitute of Genomics and Global Health, Redeemer's University, Ede 232102, Osun State, Nigeria.ORCID 0000-0002-3056-6705
Anise HappiInstitute of Genomics and Global Health, Redeemer's University, Ede 232102, Osun State, Nigeria.ORCID 0000-0001-8959-5175

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lumpy Skin Disease Virus (LSDV) is a transboundary pathogen that affects cattle, causing significant economic losses, particularly in Africa and Asia. While the virus was originally endemic to sub-Saharan Africa, it has rapidly spread to Europe, the Middle East, and Asia, necessitating comprehensive genomic surveillance. Despite LSDV's African origins, genomic data from West and Central Africa remain scarce, limiting insights into regional viral evolution and vaccine compatibility. In this study, molecular detection of LSDV was carried out on cattle samples from Nigeria, Cameroon, and Benin. However, comparative genomic analysis was performed using two near-complete LSDV genomes obtained from Cameroon. Phylogenetic evaluation revealed that LSDV strains from Nigeria and Cameroon cluster within the classical 1.2 lineage. Furthermore, the two sequences from this study cluster with the only publicly available sequence from West and Central Africa, supporting earlier findings of the presence of a West/Central African sub-lineage. Functional genomic analysis identified mutations in genes encoding ankyrin repeat Kelch-like proteins, and envelope proteins involved in immune evasion and viral virulence, raising concerns about vaccine effectiveness. Furthermore, the detection of LSDV in flesh flies (

Indexed as

Genome, ViralLumpy Skin DiseaseLumpy skin disease virusAfrica, CentralAfrica, WesternAnimalsCattleGenomicsPhylogenyAfricaankyrin repeat proteinsgenomic analysisKelch-like proteinsLumpy Skin Disease Virus (LSDV)phylogenetic analysispoxvirusesSNP mutationsvaccine efficacyvector transmission

Identifiers

PMID41011822
PMCPMC12472838

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.