Evidence map›Paper›PMID 41009656›Full record

ArticleInternational journal of molecular sciences2025

Integrating MALDI-MSI-Based Spatial Proteomics and Machine Learning to Predict Chemoradiotherapy Outcomes in Head and Neck Cancer.

Marta Grzeski, Patrick Moeller Jensen, Benjamin-Florian Hempel, Herbert Thiele, Jan Lellmann, Simon Schallenberg, Volker Budach, Ulrich Keilholz, Ingeborg Tinhofer, Oliver Klein

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Marta GrzeskiImaging Mass Spectrometry Unit, Berlin Institute of Health, Charité - Universitätsmedizin Berlin, 13353 Berlin, Germany.ORCID 0009-0002-7189-5617
Patrick Moeller JensenDepartment of Applied Mathematics and Computer Science, Technical University of Denmark, 2800 Kongens Lyngby, Denmark.ORCID 0000-0002-8479-4885
Benjamin-Florian HempelImaging Mass Spectrometry Unit, Berlin Institute of Health, Charité - Universitätsmedizin Berlin, 13353 Berlin, Germany.ORCID 0000-0002-1998-4033
Herbert ThieleFraunhofer Institute for Digital Medicine MEVIS, 23562 Lübeck, Germany.ORCID 0000-0003-2913-8305
Jan LellmannInstitute of Mathematics and Image Computing, University of Lübeck, 23562 Lübeck, Germany.ORCID 0000-0002-5243-0331
Simon SchallenbergInstitute of Pathology, Charité - Universitätsmedizin Berlin, 10117 Berlin, Germany.ORCID 0000-0002-7897-7116
Volker BudachDepartment of Radiooncology and Radiotherapy, Charité - Universitätsmedizin Berlin, 13353 Berlin, Germany.
Ulrich KeilholzCharité Comprehensive Cancer Center, Charité - Universitätsmedizin Berlin, 10117 Berlin, Germany.ORCID 0000-0001-6773-9406
Ingeborg TinhoferDepartment of Radiooncology and Radiotherapy, Charité - Universitätsmedizin Berlin, 13353 Berlin, Germany.ORCID 0000-0002-0512-549X
Oliver KleinImaging Mass Spectrometry Unit, Berlin Institute of Health, Charité - Universitätsmedizin Berlin, 13353 Berlin, Germany.

Funding

Federal Ministry of Education and Research (BMBF) 03LW0239K
6 · The paper itself

Abstract

Head and neck squamous cell carcinoma (HNSCC) is often diagnosed at advanced stages. Due to pronounced intratumoral heterogeneity (ITH), reliable risk stratification and prediction of treatment response remain challenging. This study aimed to identify peptide signatures in HNSCC tissue that are associated with treatment outcomes in HPV-negative, advanced-stage HNSCC patients undergoing 5-fluorouracil/platinum-based chemoradiotherapy (CDDP-CRT). We integrated matrix-assisted laser desorption/ionization mass spectrometry imaging (MALDI-MSI) of tryptic peptides with univariate statistics and machine learning approaches to uncover potential prognostic patterns. Formalin-fixed, paraffin-embedded whole tumor sections from 31 treatment-naive, HPV-negative HNSCC patients were digested in situ with trypsin, and the generated peptides were analyzed using MALDI-MSI. Clinical follow-up revealed recurrence or progression (RecPro) in 20 patients, while 11 patients showed no evidence of disease (NED). Classification models were developed based on the recorded peptide profiles using both unrestricted and feature-restricted approaches, employing either the full set of

Indexed as

Biomarkers, TumorChemoradiotherapyHead and Neck NeoplasmsNeoplasm Recurrence, LocalPeptide FragmentsProteomicsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationSquamous Cell Carcinoma of Head and NeckAgedAntineoplastic AgentsCisplatinFemaleFluorouracilHumansMachine LearningMaleAntineoplastic AgentsBiomarkers, TumorCisplatinFluorouracilMitomycinPeptide FragmentsTrypsinchemoradiotherapy outcomehead and neck cancermachine learningMALDI-MSIprognostic classifierspatial proteomics

Identifiers

PMID41009656
PMCPMC12469958

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.