Evidence map›Paper›PMID 41009435›Full record

ArticleInternational journal of molecular sciences2025

An Integrative Bioinformatics Approach to Investigating TIMP3 and Immune Cell Infiltration: Prognostic and Clinicopathological Implications.

Neelam Bhola, Chanchal Bareja, Amit K Jaiswal, Daman Saluja

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Article in International journal of molecular sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Neelam BholaDr. B.R. Ambedkar Center for Biomedical Research, University of Delhi, Delhi 110007, India.
Chanchal Bareja *Dr. B.R. Ambedkar Center for Biomedical Research, University of Delhi, Delhi 110007, India.
Amit K Jaiswal *School of Food Science and Environmental Health, Faculty of Sciences and Health, Technological University Dublin-City Campus, Central Quad, Grangegorman, D07 H6K8 Dublin, Ireland.ORCID 0000-0002-4551-4182
Daman SalujaDr. B.R. Ambedkar Center for Biomedical Research, University of Delhi, Delhi 110007, India.ORCID 0000-0002-9544-5170

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tissue inhibitor of metalloproteinase 3 (TIMP3) serves as a prominent endogenous inhibitor of matrix metalloproteinases (MMPs), playing a crucial role in inhibiting metastasis, and angiogenesis. However, its exact contributions to colorectal cancer (CRC) remain largely unidentified. We aimed to ascertain the prognostic significance of TIMP3 in CRC patients through a bioinformatic approach. GEPIA, UALCAN, Kaplan-Meier plotter, LinkedOmics, cBioPortal, GeneMANIA, TIMER, TISIDB, the ScTIME database, TISMO, TIDE, CAMOIP, and TISCH2 were employed to comprehensively analyze the differential expression, prognostic value, genetic alterations, signaling pathways, immune cell infiltration, tumor microenvironment (TME) and associated genes of TIMP3 in CRC patients. Compared to adjacent normal tissues, we observed a significant downregulation of TIMP3 expression in CRC samples. Gene interaction networks elucidated that TIMP3 and its associated genes play a pivotal role in cancer progression, particularly in processes critical to colorectal cancer, such as extracellular matrix organization and angiogenesis. Analysis of the TME further indicates that TIMP3 expression was intricately associated with diverse immune cell types infiltration levels, chemokines, and immunomodulators. Most importantly, those with elevated TIMP3 expression had improved immunological scores. Moreover, TIMP3 exhibited strong correlations with major infiltration-related immune cells, including B cells, CD8

Indexed as

Colorectal NeoplasmsComputational BiologyTissue Inhibitor of Metalloproteinase-3Biomarkers, TumorGene Expression Regulation, NeoplasticGene Regulatory NetworksHumansLymphocytes, Tumor-InfiltratingPrognosisTumor MicroenvironmentBiomarkers, TumorTIMP3 protein, humanTissue Inhibitor of Metalloproteinase-3bioinformatics analysisbiomarkerCRCimmune infiltrationTIMP3tumor microenvironment

Identifiers

PMID41009435
PMCPMC12469576

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.