Evidence map›Paper›PMID 41008132›Full record

ArticleFoods (Basel, Switzerland)2025

Next-Generation Predictive Microbiology: A Software Platform Combining Two-Step, One-Step and Machine Learning Modelling.

Fatih Tarlak, Büşra Betül Şimşek, Melissa Şahin, Fernando Pérez-Rodríguez

Abstract read
In one paragraph

Article in Foods (Basel, Switzerland), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Fatih TarlakDepartment of Bioengineering, Gebze Technical University, 41400 Gebze, Turkey.ORCID 0000-0001-5351-1865
Büşra Betül ŞimşekDepartment of Bioengineering, Gebze Technical University, 41400 Gebze, Turkey.
Melissa ŞahinDepartment of Bioengineering, Gebze Technical University, 41400 Gebze, Turkey.
Fernando Pérez-RodríguezDepartment of Food Science and Technology, UIC Zoonosis y Enfermedades Emergentes ENZOEM, International Campus of Excellence in the AgriFood Sector (CeiA3), University of Córdoba, 14014 Córdoba, Spain.ORCID 0000-0003-1016-5725

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microbial growth and inhibition are complex biological processes influenced by diverse environmental and chemical factors, posing challenges for accurate modelling and prediction. Traditional mechanistic models often struggle to capture the nonlinear and multidimensional interactions inherent in real-world food systems, especially when multiple environmental variables and inhibitors are involved. This study presents the development of a novel, dynamic software platform that integrates classical predictive microbiology models-including both one-step and two-step frameworks-with advanced machine learning (ML) methods such as Support Vector Regression, Random Forest Regression, and Gaussian Process Regression. Uniquely, this platform enables direct comparisons between two-step and one-step modelling approaches across four widely used growth models (modified Gompertz, Logistic, Baranyi, and Huang) and three inhibition models (Log-Linear, Log-Linear + Tail, and Weibull), offering unprecedented flexibility for model evaluation and selection. Furthermore, the platform incorporates ML-based modelling for both microbial growth and inhibition, expanding predictive capabilities beyond traditional parametric frameworks. Validation against experimental and literature datasets demonstrated the platform's high predictive accuracy and robustness, with machine learning models, particularly Gaussian Process Regression and Random Forest Regression, outperforming classical models. This versatile platform provides a powerful, data-driven decision-support tool for researchers, industry professionals, and regulatory bodies in areas such as food safety management, shelf-life estimation, antimicrobial testing, and environmental monitoring. Future work will focus on further optimization, integration with large public microbial databases, and expanding applications in emerging fields of predictive microbiology.

Indexed as

data-driven modellinggrowth inhibitionmachine learningmicrobial growthpredictive microbiologysoftware platform

Identifiers

PMID41008132
PMCPMC12469064

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.