Evidence map›Paper›PMID 41006763›Full record

ArticleCommunications biology2025

Systems-level exploitation of OxyR regulon unravels a potential antibacterial target in Pseudomonas aeruginosa.

Kaiyu Cui, Zhiyu Fu, Ruiling Sun, Qiuyun You, Fei Wang, Xuan Sun, Yong Tan, Yuwen Xia, Ping Wang, Qing Wei and 2 more

Abstract read
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Factors governing the response ofFrontiers in cellular and infection microbiology · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Kaiyu Cui *School of Pharmaceutical Sciences, Hubei Shizhen Laboratory, Hubei University of Chinese Medicine, Wuhan, China.
Zhiyu Fu *Department of Pediatrics, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China.
Ruiling SunSchool of Pharmaceutical Sciences, Hubei Shizhen Laboratory, Hubei University of Chinese Medicine, Wuhan, China.
Qiuyun YouSchool of Pharmaceutical Sciences, Hubei Shizhen Laboratory, Hubei University of Chinese Medicine, Wuhan, China.
Fei WangDepartment of Encephalopathy, Wuhan Hospital of Traditional Chinese Medicine, Wuhan, China.
Xuan SunSchool of Basic Medical Sciences, Hubei University of Chinese Medicine, Wuhan, China.
Yong TanInstitute of Basic Research in Clinical Medicine, China Academy of Chinese Medical Sciences, Beijing, China.
Yuwen XiaInstitute of Basic Research in Clinical Medicine, China Academy of Chinese Medical Sciences, Beijing, China.
Ping WangEngineering Research Center of TCM Protection Technology and New Product Development for the Elderly Brain Health, Ministry of Education, Wuhan, China. 1008@hbucm.edu.cn.ORCID http://orcid.org/0009-0008-7651-1719
Qing WeiShanghai Cinopath Medical Laboratory Co., Kindstar Globalgene Technology Inc, Shanghai, China. weiqing@cinodx.com.ORCID http://orcid.org/0000-0002-6956-6294
Dao WangDepartment of Pediatrics, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China. deai315@163.com.ORCID http://orcid.org/0000-0001-8426-1467
Weifeng YangExperimental Research Center, China Academy of Chinese Medical Sciences, Beijing, China. sunzhuyang@126.com.ORCID http://orcid.org/0009-0001-4044-607X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacteria coordinate the response to oxidative stress through LysR-type transcriptional regulator (LTTR) OxyR. However, only fragmentary information on the regulation and function of OxyR has been gleaned in the opportunistic pathogen Pseudomonas aeruginosa. Here, we delineate the OxyR regulon using multi-omics analyses. OxyR is found to positively regulate several genes involved in quorum sensing (QS) and energy metabolism. OxyR is further involved in the negative regulation of amino acid transporters that was confirmed by metabolomics analysis. Finally, we uncover gltS, an OxyR regulon gene, could be used as a potential drug potentiation target. Altogether, our results confirm that, apart from its dominant role in defense against oxidative stress in P. aeruginosa, OxyR acts as a global regulator of QS, energy metabolism and amino acid homeostasis, but also serves as a model system to identify potential antibacterial target such as gltS.

Indexed as

Anti-Bacterial AgentsBacterial ProteinsPseudomonas aeruginosaRegulonRepressor ProteinsTrans-ActivatorsEnergy MetabolismGene Expression Regulation, BacterialMetabolomicsOxidative StressQuorum SensingAnti-Bacterial AgentsBacterial ProteinsOxyR protein, Pseudomonas aeruginosaRepressor ProteinsTrans-Activators

Identifiers

PMID41006763
PMCPMC12475218

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.