Evidence map›Paper›PMID 41006678›Full record

ArticleNPJ precision oncology2025

Single-cell RNA-sequencing of BCG naïve and recurrent non-muscle invasive bladder cancer reveals a CD6/ALCAM-mediated immune-suppressive pathway.

Ivan Juric, Emily E Fink, Hong Qiu, Pierre-Emmanuel Desprez, Arvind Ravi, Mark Holton, Vladimir Makarov, Nima Almassi, Booki Min, Gad Getz and 4 more

Abstract read
In one paragraph

Article in NPJ precision oncology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Ivan Juric *Center for Immunotherapy and Precision Immuno-Oncology, Cleveland Clinic, Cleveland, OH, USA.
Emily E Fink *Charles River Laboratories, Garfield Heights, OH, USA.
Hong QiuCharles River Laboratories, Garfield Heights, OH, USA.
Pierre-Emmanuel DesprezUrology Department, Claude-Huriez Hospital, CHU de Lille, Lille, France.
Arvind RaviBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Mark HoltonBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Vladimir MakarovCenter for Immunotherapy and Precision Immuno-Oncology, Cleveland Clinic, Cleveland, OH, USA.
Nima AlmassiGlickman Urological and Kidney Institute, Cleveland Clinic, Cleveland, OH, USA.
Booki MinDepartment of Microbiology and Immunology, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.
Gad GetzBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Timothy A ChanCenter for Immunotherapy and Precision Immuno-Oncology, Cleveland Clinic, Cleveland, OH, USA.
Tyler AlbanCenter for Immunotherapy and Precision Immuno-Oncology, Cleveland Clinic, Cleveland, OH, USA. albant@ccf.org.
Angela H TingDepartment of Epigenetics & Molecular Carcinogenesis, M.D. Anderson Cancer Center, Houston, TX, USA. ahting@mdanderson.org.
Byron H LeeDepartment of Urology, M.D. Anderson Cancer Center, Houston, TX, USA. bhlee@mdanderson.org.

Funding

Physician Scientist Training in Cancer ResearchT32CA009172 · NCI · DANA-FARBER CANCER INSTITUTE · PI Jennifer R Brown, James A. DeCaprio · 1985 to 2026
$17.1M
Translational and Clinical Trial Correlates CoreU54CA274513 · NCI · CLEVELAND CLINIC LERNER COM-CWRU · PI Timothy An-thy Chan · 2022 to 2026
$9.3M
Chromatin Modifier Gene Mutation and Enhancer Dysfunction in Bladder CancerK08CA237842 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI LEE, BYRON H · 2019 to 2023
$1.2M
Immunogenomics platform for the analysis of cancerR50CA293821 · NCI · CLEVELAND CLINIC LERNER COM-CWRU · PI Vladimir Makarov · 2024 to 2026
$638k
NCI NIH HHS K08 CA237842NCI NIH HHS K08CA237842NCI NIH HHS R50 CA293821NCI NIH HHS T32 CA009172NCI NIH HHS U54 CA274513
6 · The paper itself

Abstract

Bacillus Calmette-Guérin (BCG) is the mainstay of treatment for intermediate- and high-risk non-muscle invasive bladder cancer (NMIBC), yet recurrence rates remain high. To improve the efficacy of BCG, a better understanding of the immune landscape underlying BCG resistance is critical. Here, we performed single-cell RNA-sequencing (scRNA-seq) and whole-exome sequencing on tumors from NMIBC patients before and after BCG treatment. Our analysis revealed a marked increase in CD6/ALCAM interactions between T cells and urothelial cells in BCG recurrent tumors. CD6-high T cells were enriched in recurrent tumors and exhibited downregulation of activation-related genes, indicative of functional impairment. These observations were supported by analysis of an independent BCG-treated NMIBC cohort, in which CD6/ALCAM signaling was correlated with shorter recurrence-free survival (p = 0.00059). Our findings reveal a previously unrecognized association between CD6/ALCAM signaling and BCG resistance in NMIBC patients and highlight this pathway as a potential therapeutic target to enhance response to BCG.

Identifiers

PMID41006678
PMCPMC12475466

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