Evidence map›Paper›PMID 41006337›Full record

ArticleScientific reports2025

Development of a novel assay for antigen presentation measurement.

Mei Li, Falak Harshit Sharma, Yi-Ling Chen, Marco Esteban Araneda, Amy Hammett, Derick Miller, Lilly Pearce, Kuan-Hui E Chen

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Mei LiDepartment of Biological Sciences, Texas Tech University, Lubbock, TX, 79409, USA.
Falak Harshit SharmaDepartment of Biological Sciences, Texas Tech University, Lubbock, TX, 79409, USA.
Yi-Ling ChenDepartment of Electronic Engineering, National Kaohsiung University of Science and Technology, Kaohsiung, 80778, Taiwan.
Marco Esteban AranedaDepartment of Biological Sciences, Texas Tech University, Lubbock, TX, 79409, USA.
Amy HammettDepartment of Biological Sciences, Texas Tech University, Lubbock, TX, 79409, USA.
Derick MillerDepartment of Biological Sciences, Texas Tech University, Lubbock, TX, 79409, USA.
Lilly PearceDepartment of Biological Sciences, Texas Tech University, Lubbock, TX, 79409, USA.
Kuan-Hui E ChenDepartment of Biological Sciences, Texas Tech University, Lubbock, TX, 79409, USA. kuachen@ttu.edu.

Funding

Dissecting the role of mirtrons in human cancersR16GM153648 · NIGMS · TEXAS TECH UNIVERSITY · PI Ethan Chen · 2024 to 2026
$465k
Tumor stem cell initiated mitochondrial transferR03CA293129 · NCI · TEXAS TECH UNIVERSITY · PI CHEN, KUAN-HUI · 2024 to 2024
$162k
NCI NIH HHS R03 CA293129NCI NIH HHS R03CA293129NIGMS NIH HHS R16 GM153648NIGMS NIH HHS R16GM153648
6 · The paper itself

Abstract

Accurate measurement of antigen presentation is essential for understanding immune responses to infections and tumors. However, current methods are cumbersome, time-consuming, and rely on known peptide sequences and antibodies, leading to unstable antigen presentation, antigen loss during processing and editing, and inconsistent results. We developed a novel, cost-effective method for examining antigen presentation using Click chemistry, which utilizes a bioorthogonal reaction between azides and alkynes/cyclooctenes. Antigens were pre-labeled with azides or alkynes to facilitate their uptake by antigen-presenting cells (APCs). Their presentation was subsequently detected using fluorophore-conjugated dibenzocyclooctyne or azide. The study involved three types of APCs, mouse macrophages (RAW264.7), mouse dendritic cells (DC2.4), and mouse primary bone marrow derived dendritic cells (BMDCs), and three categories of antigens: BSA, bacteria, and tumor antigens. Antigen presentation was measured and validated through multiple analytic techniques, including a fluorescent plate reader, flow cytometry, and ELISA. We showed efficient and stable presentation of antigens on the surface of all RAW264.7, DC2.4 and BMDCs. Antigens labeled using Click chemistry showed enhanced stability within the phagolysosomes of APCs. Notably, antigens labeled throughout the peptide sequence using azidohomoalanine (AHA) exhibited superior presentation on MHC class II compared to antigens labeled only at the N-terminus. Furthermore, this method preserved the natural antigen editing process, enabling the selection of high-affinity antigens for MHC presentation. This novel antigen presentation assay offers key advantages over existing methods, including faster processing, cost-effectiveness, stable antigen presentation, and reliable detection signals. When paired with mass spectrometry, it can identify stably presented tumor peptides, offering potential targets for immunotherapy development.

Indexed as

Antigen PresentationAnimalsAntigen-Presenting CellsAntigensAzidesClick ChemistryDendritic CellsFlow CytometryMacrophagesMiceRAW 264.7 CellsAntigensAzidesAntigen presentationBreast cancerClick chemistryMHC I/IIPhagocytosis

Identifiers

PMID41006337
PMCPMC12475488

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.